RNA id: AMCG00020079


Basic Information

Item Value
RNA id AMCG00020079
length 1971
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00020079
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9162006 ~ 9167067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTTTCCGAGCGGTGTACCACCTTACCCCCTGAATGGCGTCAGTTCTTTGGGAACCCTGGAAGCTGATGAGCAGGAGGGCTTCGGCAAGGGTGAGAGGAAGCAGGAGCAGGACACAGAGGAGGAATTAAACGGAAGCTACAGCTTTCTGAACGACACCTTGAGGTTTCCACCAGATGAGAGTGGTCCAGAGGTCATGCTGAAGGACAGTCCTTATATACCCAGACCGCCCGTACTTCCAAAACCTTGTGGGCGAGCCACCTCAGCCAAGAGCTCCTCGAAGGAAGCGAAACTGAGAAGGAGGAAGATTAAAACCAGTCAGGAAAGTCTAACTGACCCAACAGGGACTGGATCTTCAACAGACTCCCTCCAGGACGATATGATTGGCCACCCTGTAGCAAATAGCACCTTGGCCCTTCAGGACAGGCAGGCCTCTTCCAGCAGTCTtcacagcagcagctccagagATGTCCTGCCCCCTGAAGCTAGAAACAGTAGCAGCAGCCATTCAGACCCAGGGAAACGGAGCTCCAATCCCTATATGGGCGACACCCAAAGCCAGATGGCAGGGTCTTTGAAAACCAAACTGTCCCCTTTGCAGCCTGTCAGACCTCTGCCTGCTGTGGTGCACAACATGGCTTCCACTTCCTTAAGGACAGCTAATAGGATAGACCAGGATTGTGTGGATTACACCTTGATGGCAAGGGGGGGCTACGAAAGGCAGCAAAGTAACCTCAGCGACAGCAGGCTTTTGGACAGTATGGTGTCGGATTGCACCTCCTTCAACTCCATGAAGTCTACGCTCAGTGTGCTCAGTCCCATTCGGCCCAAGGATGTACGGAATCGGAGCTTCCTGGAAGGCAGTGTTATGGGCCATGGTGCATTGCTAGGAGCAGAAGAGCTGGATCGGTACTTTCCCGACAGAAGGATAGGAATATACATTGCTACCTGGAACATGCAGGGCGAACAGGAACTACCTACTAATCTGGATGATCTTTTGCTCCCCTCGGACTCTGAGTTTGCACAAGACTTCTACATCATAGGCATTCAGGAAGGCTGCTCTGACAGGAGAGAATGGGAGGTCCGCCTGCAGGAGACGCTGGGGCCGTATTACGTCATGCTGTACGCAGCCACGCATGGTGTGCTGTACCTCACCGTCTTTATCAGGAGGGATCTCATCTGGTTCTGCTCAGAAGTTGAACATGCCACAGTTACAACGCGGATCATCTCTCAGATCAAAACGAAAGGCGCCGTGGGAGTGGGGTTTACATTCTTCGGCACGTCCTTCCTCTTCATCACATCCCACTTCACCTCTGGAGACTCCAAGGTCTATGAAAGGATCCTGGACTACAATAAGATCATTGAGGCTCTAGCTCTTCCCAAAGTGCTTCCTGATACCAACCCGTACCGCTCAAATTCCTctGATGTTACATCCCGATTTGATGAGGTTTTCTGGTTTGGGGATTTTAATTTCCGTCTGAGTAAAGACCGTGTAGGAGTGGAGTCAATTCTGAAACAGGACCTGGGCTCCGACATGAGTGGACTTCTGCAGTATGACCAGCTCCTCAAAGAAATGAAAGATGGGTCCATTTTCAAAGGTTTCCAAGAAGCACCTATTCAGTTTCTCCCAACATACAAGTTTGATGTCGGATGTGACACATATGATAGCACTGGAAAGCAAAGAACACCATCGTACACAGACCGTGTTTTGTATAAAAGCCGTCAGAAAGATGACATTAAGGTTATGAAGTATACCTGCTGCTCTACCATCAAAACCTCAGATCACAGGCCGGTGCTCGCTGTGTTTCAGGTGAAAGTGCGGCCAGGAAGAGACAGCATTCCTTTGGGTGCTGGTCAGTTTGACAGACACCTGTATCTGGAAGGCATCCACAGGAGGATCACCAGGGAACTGAAACGGAGGGAGGCTTTGAAGAATCAGAAGACCAGTGCAGTGTGTTCTGTATCCTGA

Function

GO: NA

KEGG:

id description
K20278 INPP5E; inositol polyphosphate 5-phosphatase INPP5E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76097 lncRNA downstream 1273 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 144600 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 352113 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 362839 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 365691 8793968 ~ 8796315 (-) True G60723
TU76105 lncRNA upstream 102493 9269560 ~ 9303247 (-) True G60839
TU76310 lncRNA upstream 760910 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 918846 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 1036772 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 1339341 10506408 ~ 10507637 (-) True G61098
AMCG00020083 mRNA downstream 13695 9145242 ~ 9148311 (-) True AMCG00020083
AMCG00020080 mRNA downstream 16921 9137733 ~ 9145085 (-) True AMCG00020080
AMCG00020082 mRNA downstream 34938 9115473 ~ 9127068 (-) True AMCG00020082
AMCG00020077 mRNA downstream 78881 9077740 ~ 9083125 (-) True AMCG00020077
AMCG00020078 mRNA downstream 112238 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020084 mRNA upstream 2485 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020087 mRNA upstream 140842 9307909 ~ 9327357 (-) True AMCG00020087
AMCG00020088 mRNA upstream 233585 9400652 ~ 9444244 (-) True AMCG00020088
AMCG00020093 mRNA upstream 337319 9504386 ~ 9510745 (-) True AMCG00020093
AMCG00020094 mRNA upstream 375281 9542348 ~ 9547581 (-) True AMCG00020094
TU75987 other downstream 322061 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 333897 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1599414 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2690572 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 2695420 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1588401 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2528624 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3317302 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3317302 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 3323631 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile