RNA id: AMCG00020082


Basic Information

Item Value
RNA id AMCG00020082
length 1836
RNA type mRNA
GC content 0.52
exon number 19
gene id AMCG00020082
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9115473 ~ 9127068 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATATTAGACGTCATGGAGCCAGGGTCCTATGGAACGGTTGAGTGCCTGGATGTGGGGCGAGCTAACCGTGCTCTGGAGGAGaaGGAAGGAGAAGCCAGCAGCACAGGTTGGGCAGATATTTCCTCCGTGATGCTGTGCCTGGTGACGGATTGCTCATACATGGAGAGTTTGTCTGCAGCAATCATAGTCCAAAGGCAGAAAGGAAAGAAGTTTAAGGAGGGGGTGATCAGGGGTTTCTTGGGGCAGATGTTGGACACTTTAGCCTTTTTGCACAAGCAGAAAATCATTCACAGAAATCTCAAGCCATCTAACATTCTGATGACAAAAGACTTGACATTCATGTTATCTGATTTTGGTACCCCTACTCTGACTCAGGATGAACTGAAACTGGAGAAGAGAATGAAGGAGAGTGAAAAATCTTGGATGGCCCCAGAAATCTTCACACTGCGACTGTGGAGTGAGAAGTCTGACATCTGGTCTCTTGGATGCATCCTGCTGGAAATGCTGATTTGTCACATGCTAGATGCAGAGGCGTCCCTGTTGCTGCTCCAGAGGATCAGGAAGGACTCCCAGCCCCTGGAGGTGGGGGTCTCCCCAGACCTGTCCAGTTGTCTGCAAAACATGTTGGAGAGAAACCCAGAGAGGAGGGCCAGTGTGTGGGAACTCCTCAATGAGCCTTTTGTTAAGGTCTGTCTGGTCCAGTGTGGCTCTCGTCTTGTGGGGGTGAAAAAGAAACTACCTCCTGGCCTGACTGGAGCTCCCAGTGAAGGAGGAATCAAGAGCATTTTAGaaTTAATGGAAAACTACAAGGATGTGGAGGAAGCCCAGCTCTCAGGCCTGGAATATCTGCTGACAGAGACAGCTGACAAAGACAGTTCGCTCCCAGCGGTTGTGCAGTGTGTCACCTCGGCCATGAGGAGTCTGGATTGTGTAGAGGTGCAGCGAGGGGCCTGTCAGGTCCTACACCGGCTCTTAATTGCAGTTCTGGGCCAGAGTGTGGCGGGGGCATGCCTGCGCAGTGAGGAAGTGGTCTGTTCTGTACTGAACACCATCCACACCCACTCGGCTGACCGAGACCTGCTCACCCTCGCCTTGCCACTGATTCTCATCCTGTCAGCTGATGGACCATATTCATCTCATATTCATCTGTCTTCAGAGAGCTCCGCAAGAAGGATTGCAGAAGCGGGGGGCATCCAGGAGATTGTGAGAGCATTGAGGAGGTTCTCTGGCGACCGAGACATCTGCCTGCCatgctgtgaagtgctctgGAGTTTAGTGGTGAACCGGAGTAATTCCAAGATGGTGTCAACAGAGGGCACACTGGAGGCTGTGTCCTTAGTGGGAGAAACGCACCTGGAGGATGGGGAGCTGATGGAGACGGTGTGTGCTGCCCTCTGGTCACTGACACTCAGAGagAGTTTGAAGGAGAAGGAGTGGGAGGATACCACTCTGCTCCTTATGCACACCCTCAATACCCACACCGAGAGGCAGGGCGTTGTGAAATACGCTACTTTAGCCCTGGCCAGCTTGGTAAGCAAGTCAGAACTGGCTGCCTTCAGAGTGCTGCTGGCCCctagtggagggagtggagtaCGGCTGATCAGCGAGGCCTGCCTCCGTCACCATGATGATCCAGAGGTGGTAGAGAACATCTGTAACCTGTTCAGTGAGATGGCCCAGTACGACGACGTGATTCCAGAGTTAATGTCTGAGAATGTGAAGGAGCTGCTTCAGCAGATTCAAATCAAGTTTGCATCAAATAAGtCTTCTGTTGCTCAACAACTCCAGTGCCATTCTGATCTGAGGTGCCCGGCGtctGCAATGCTGGAGACTTAA

Function

GO: NA

KEGG:

id description
K17546 STKLD1; serine/threonine kinase-like domain-containing protein STKLD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76021 lncRNA downstream 98067 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 305580 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 316306 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 319158 8793968 ~ 8796315 (-) True G60723
TU75879 lncRNA downstream 1068232 8044609 ~ 8047241 (-) True G60656
TU76097 lncRNA upstream 30859 9157927 ~ 9160733 (-) True G60833
TU76105 lncRNA upstream 142492 9269560 ~ 9303247 (-) True G60839
TU76310 lncRNA upstream 800909 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 958845 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 1076771 10203839 ~ 10205678 (-) True G61052
AMCG00020077 mRNA downstream 32348 9077740 ~ 9083125 (-) True AMCG00020077
AMCG00020078 mRNA downstream 65705 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020081 mRNA downstream 149443 8964561 ~ 8966030 (-) True AMCG00020081
AMCG00020067 mRNA downstream 239210 8854816 ~ 8876263 (-) True AMCG00020067
AMCG00020066 mRNA downstream 287863 8812785 ~ 8827610 (-) False AMCG00020066
AMCG00020080 mRNA upstream 10665 9137733 ~ 9145085 (-) True AMCG00020080
AMCG00020083 mRNA upstream 18174 9145242 ~ 9148311 (-) True AMCG00020083
AMCG00020079 mRNA upstream 34938 9162006 ~ 9167067 (-) True AMCG00020079
AMCG00020084 mRNA upstream 42484 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020087 mRNA upstream 180841 9307909 ~ 9327357 (-) True AMCG00020087
TU75987 other downstream 275528 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 287364 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1552881 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2644039 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 2648887 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1628400 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2568623 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3357301 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3357301 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 3363630 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile