RNA id: AMCG00020083


Basic Information

Item Value
RNA id AMCG00020083
length 1151
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00020083
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9145242 ~ 9148311 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTCCTGAATACATCTTTAGGTTTTGGTCTCATGATGAACTGGAAGATGAGGCCAATCTgaatgagtttcagaagaagaTGCTTGCAGAACACCGCCAGGCAATTTCAAATATCAACCGAGGTTGTGTTATTATGGAAAGAAACCGAAGGAAGAGGATCACAATCAGCTGCAATAATCTCCGGCAGCTTCTCCCCAAGTTGAGTGGCTGGAGAACTGACATGGTGACTGTCCTGGAAATGACTGTCACCTACCTGGAGCTGATCCAGGAGTTCCTCCCAGCACACCAGCACAGAACGATGCTGTATCCTCCGAAGGAGCTGTGCAATAAGTGGCACGCAGAGCGACAGCTGAAGAGAGAGCAGTGCAGGAAGGTGCTCTCTGAGGAAGTCGGCAGGCAAAGAGTCCAGTGCTCAAAAAAGAACAGAGCTGGTCAAGGGAAATCTCAGACAAAGTGTGGCTTCAGAAGGAAGCAAAACCGAAAAGGCAGCAGTCTTAAAAAgtccaagaccaaagagctttCGGCTGACCAGCCTAGTGCAGCAGCTGATGCTGGACCACAGGATTCAACCGCTTCTGTGTCGCGGCCGTTTGTGCTGGATTATGGAATAAACTGCAGTCCAGAAGTTACGTTGCCTACCTGCACTCCTTCAGCTATCTCTGTGGTCACCCCTGCCATTCCTGGCTCTGACAGCTCCTTCTCCTGGCCCTGCTTTCCCACACCTGTGAGATGGCAGACGGCACCATCACTGTCTGATTCACACACAACTCCACAGATAAACTGCAGATTTCAACCACCTCTTCCACAAGAGAAAACCCCCATCAGCACAATTCATCAGATagATTGGGAAGGGATTCTGGAGGGAGAGCAAGCAGTCTTTGGCGATTCTGTGTCTCTCAATCCAAGTGCAGCAGCACACAGCAATGCATAAAGGAGGGGCCATAGGACAATGGCTGTTACCTGGCGGAGATGCAGCCAGATCCAATGTCGGAAGGAAAAGACAGATCTCTGCAGGGGAGCAACgtattcagaaatgtttttctttgagaactttgacaaataaaatatccaTGCAATGCTACTATCTTTTTAATTTCGCTTCTCTTCATGTGCCTGttatggtgtttgtttttaaatgatctgaTGGAG

Function

GO: NA

KEGG:

id description
K22495 SOHLH1; spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76021 lncRNA downstream 127836 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 335349 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 346075 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 348927 8793968 ~ 8796315 (-) True G60723
TU75879 lncRNA downstream 1098001 8044609 ~ 8047241 (-) True G60656
TU76097 lncRNA upstream 9616 9157927 ~ 9160733 (-) True G60833
TU76105 lncRNA upstream 121249 9269560 ~ 9303247 (-) True G60839
TU76310 lncRNA upstream 779666 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 937602 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 1055528 10203839 ~ 10205678 (-) True G61052
AMCG00020080 mRNA downstream 157 9137733 ~ 9145085 (-) True AMCG00020080
AMCG00020082 mRNA downstream 18174 9115473 ~ 9127068 (-) True AMCG00020082
AMCG00020077 mRNA downstream 62117 9077740 ~ 9083125 (-) True AMCG00020077
AMCG00020078 mRNA downstream 95474 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020081 mRNA downstream 179212 8964561 ~ 8966030 (-) True AMCG00020081
AMCG00020079 mRNA upstream 13695 9162006 ~ 9167067 (-) True AMCG00020079
AMCG00020084 mRNA upstream 21241 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020087 mRNA upstream 159598 9307909 ~ 9327357 (-) True AMCG00020087
AMCG00020088 mRNA upstream 252341 9400652 ~ 9444244 (-) True AMCG00020088
AMCG00020093 mRNA upstream 356075 9504386 ~ 9510745 (-) True AMCG00020093
TU75987 other downstream 305297 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 317133 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1582650 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2673808 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 2678656 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1607157 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2547380 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3336058 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3336058 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 3342387 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile