RNA id: AMCG00020084


Basic Information

Item Value
RNA id AMCG00020084
length 9707
RNA type mRNA
GC content 0.51
exon number 31
gene id AMCG00020084
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9169552 ~ 9193460 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTACTCGTCGAAGATGGCGACTGTGTGTTTGCCTCACGGTCCTGCAATCGTGTAggaattcatatttaattccGCTTCTGATCGAGCTGTGTATTTTTTGGCCGCAGGGAGGATCTGAGTTCTCTTTCTCTGAGAGctgAGTGTAAACTTCAACTCCTAAGCAGCCTAATTCTGGAATAACATTTCTTGCAACTGGAATAAAAGCTGGCAATGCAGCCACCTCCTCGAACTGCACCCCCAGGGGCTGCTGGTCCTCCACCCACGGGGGGAGTCCCCAACGCATTTCGGAGGACCAGGCTGCCTTACGGCAAACCTGGGAACACACCCATGCCAGTGGCAGCTGCGCTTATTCCGCCTGTGACTGACCCCTTTGCGTATGGCCGCCAAGCACCACAGACCACGCCTGTTGGAAATCACCCCCCGCCTCCTAGGAGCAGCCCACTTCCAATGCAAAATCCACTTCCTTCAGGATTCCTTCAGACCCCTCCAGTCCAGAGTCAGTCGGCGCCTCCGCAGATGGTAGATGGCCCTCATCCTGCACGTCCACTGCCTTCCACAGCTGGTCCGCCCATCAGTCTCTTCACCCCGCACAGCAGCGTGGCTCCGTCACTGCTGCCAGGACATTTCAGTAACGCTGACAGTTTCACTAGCCCAGCTCCTCCTGGTGCAGAAAGAGGGCAGTTCAACTCAAGAGAACATTCACCTTATCATGTGCAAGGAGCTCCAGAGAACAGCTTTGAAGGCACACCCTTTGCTGCAGCCCCCTTACAAAACAGAGCTACCCATGGGCAGGAAATGAGGAGGGAGCCTGCCTCTTACAACCCTATGGTCCCAAGCACCATACCCTTCCCTCCTCAGAACATGCAGCCATCAGCCACACAATGGGTGCCCGATCACGGCAGCCGGCCTCCTTCAGTTCAGAATTATTTTCAGCCTAGCAGCGAGCATCCATCTCAGTCTTTCAGTGCTCCCCCGCCAGCCTCGTCCCCAGCAACTATACCTCCTCAACCGCCACCCCAGAGTCAGGTCCGTTCAGATCACCAAGGCCACATTGGACAGCAAAATGTCATGCTGGGTCCAGGGTCAGCCACCAGTGACCGCCAGCAGTTTCCTGACACAACGGAGGGTAGCGAAGTACCAGTTTCCCAGCACTATAACCCTCAGATTCCAGCTCAGAGTTATTTCAATCAGAGTTTTTCAGCACATGATCCGTGGTACTGCCAGCCTGCCCAGGAGCAGTTCTACCATCAGATGGCTGGAGCCGCATCTAATAACCTCCCCAACTTTACTAACCCTGAACCAGCAGCTGTTCCCTGGCAAGCTGGTCTTCCCCCTGCCACTAACCCTGCCCTTTACGAATCGGATCCGGGCaccatttcaatgttttttaaagggaacgacgttgaaaatgaagaaacactTGCAAGTGAGCAGACAACCATCAATGGAGTTGCGGGAGGAGACTCGCTGGCAGCCGGCCAGGGCACCCTTTTTAACCCTTCATTTCCAAATCAGCAGCCGCAGTCTTTGCAGCCACAGATGGGCGTTGAAGTGGCCCAGAGCACATTGGAAGTGCATCAGCAGAGCTTTGACCGCTCTGTGACTGTTCATAGTAATGCACATCTGGGCAGTGGAGCCATAGGCTCGTATGAGAGTGGTATTGCCAGCGATACACAGAAAAATGTTGGGGCGCACTTTGACAATGTGGAAAACCTGGAATGTGTAACAAACCAGGAGGTGTTACCTAGTGAACCACACAATGTCCCACCACTGCCTCAAAATGCGAATGAGGGTATAGGTCCTGGTGAAAGTAATCCTGCAGCTCAGGTCGGGGATAATTTTGAGGGGGGGCCCAACTTGGAGACTCCAGATTCCATACCTCATCCTGTTCGGTCTGAGAGCGTCTCGTCGAGCTACAGCAATGTGAGTCACAGTAGTGCATCTAGCACAAGAAGACCACAGGGAGTGGTGGGAACTTTTATACAGCAAGAGATTGCTAAATCCACTGAAGAGGTGTCTGCTGGCTATTTTGAGCAGATTGACACATCTCCTGCAGTGGAGTTGCAGTCAGTTGAGCAAAATATGCCAAATGTAATGTATCAAAGTCAGCTCTCTCAGCCTCCAACCCCCAGCCCTCCAAAACCAACAGGAATATTTCAAGCCAGTGCAAACAGTTCATTTGAACCGGTCAGATCCCATGGAGTTGGTGTCAAACCCATTGAAGTTGATCAAGCCAGGATGGTCATGGAGAAAAACAATGGAGCTCAAGGCACTGCACTACAGGGGTTGGTAGTTTCAGATGCCTCCCCTGGTAATCTTGAACAGCCACCAGACaacctggaaaatatatttatgccTTCAGGTCACCATCATGCCATGGGGCCTCCCCATGTAGGCAGCCCTACAAATGTGATGCAGCCCATTGTCAAGCCCATGGTAGAGACGGTCCTTCCAGAAAGAAGGCCCTCCTCTAGAACACATGGGGCTCGTCTGAAATGTGAGAGTCCTGCCACCACTCTGTGGGCCCAGAATGAGATGCAAATATTGGGGGCTAACATTCTTCTTGCTCCAGCTGCACCCCCAGTTCATAGCATAATCAAAAACCCGAGTGCAGAGGTTATTCAGCCTCCTGAGGATGGCCCCTTGAACCATTCATTTCAGCAGCAGTCTCCATACCAAGCCCCCCCTGCAGAGAAGCCAGACACGTCATCTGAGAATCTTGAGAACCCTCCCAAAGTGGGGGAGAGTGACCCGCTGAGCACCCAGGCAAGTTTGGGCTATGCTAGCCTGTTAGTAACTTCCCCAGCAGCTGAATCATTCCAGAATCAGCCTGTCTTGATTGCCCCTCCTGCTCAAAATTGTGTGATTCCTTCAAATAATGCCCCACTCTCTTTACTTAATCAAGTTAACCCAAGTGAAACTTTACCAAATCAAGGGACAGATGAAAAAGCCTTGCCTGTACAGCAGGTTCCTGTAACATCTGGTACTAATGCATTGCAGCCAGGTCCCCCAACAAGCATGTTATTGCCTAATCATCCCCCACATTTAATTGCTTCATCAATGACCTCATCTGGAAACATCTCCAGTCAGCCTGGGAACATGATCATCCCATCTCCACTGCATCACAATCCTCTTAATTTGGCTCCAGAAAGCAGGCAGAATGTGAAACGGCCACCAGAAAGCACTGCTCCACAGTCGGTAAATGCCACCATCTCCAGGGCCGATGCACAGGTAGGTCACAATAATTTGGCACACACCCCCACCAGTTCCCAAGCCCAACCTGGCATTCCCTTGAATGCTTCCAATTACGAACTCCTCAATTTTTCCCTGCACAATCCACAAACCAACCAAAATCAAGCTCCAAATTCAAGCACCCACCCGCCTCTGGTTGGTTCTCAGCAACCTGTGGCCATCAAGCAAGGCACACCAGACAGTAATGCAGCAGGGGTTTATCTGCAGGTAACGAAAGGTGCACAGCAGACGGGAAAGGGACAGCATGAACCACCTATGAAACAACTGGCAGGTGTAGTCTCTCCGCCAGTGAATGCTAATGCCCAGCAACAAGCAGCCGAGCAGTCGCAGAAGCCCGAAGTTAGACCTGGACCCCAGGGAAATGGAGCTTCACCACAAGGACCGCTACCAAATAACCAGTATCCTCAACCTCCGCCCACGGGACCAGGCCTGCCAGGCGTAGAAGCTCCAAATCGATCCGTGGGATACCCTGCAGGACCAGGAGGGCCACAGCCACCCCAGTACCCTCCACATCTGTTGTCGGGGAACTCCCAGCAGCCTCCTGATCCACAGCGGCCTCCCTCCACACACCCCCCAGCGCCCGGGTATGGGCCGCCCTCTCAGCCCCCAGCCCCCGGGTATGGGCCACCCTCTCAGCCCCCAGTGCCAGGGTATGGGCCGCCCTCTCAGCCCCCAGTGCCAGGTTATGGGCTGCCCCCTCCGAACCCAGCGCCCGGGTATGGGGGTTATTACGGCGGGGCCTATCCTGAGTATCCTGATGGCAGGCAGCCCTACCCACCGCCTTATCCCCCATCCGATCCCAGAGCTGCACAACCATATTGCCAGGATGATCCCTACAGAAAGTATGATGCCCGATATGGCAGATATGAAGGCTATAACCCAGGATACAGGGAAGGGGAGCGATACCAATACCCTGAGCAGCCAGAGCGGCCCAGCTCCAGAACAAGCCAGTATTCGGACCGGCCTTCCTCCAGGCAAGGCTATCCCGAAGACTATCAGAGAACTGGTCGAAGTGCCTATGATGAATATTATGCAGACtactataaaaaacaatatgactACGGAGATCGAAGCCGGTGGGACCGTTATGATCCTGCCTCCTATGACTCGCGATACAGAGAGTACTACGACCCCTCTTACTGGTACAACTATGATCCAGAGGCCTACAGGAGAAGAGAGGCCTATTATAGCCAGCAGTATCCTATGAGgcgCGAAGGCTATGATGATCGCTGGCGCTACGATCCTCGCTATGACTCCAGCTTTGATGACGAGTATGGCCGGCCGAGGGACCCCTACGTGGACGACTACGACCGGCGGAGCAGTCAGGTGTACAGAAGTCAGCAGGACCTTGTAGGTGCGAGTTATGAACCCTCAGGCCAGGCTCCTGCTCTCCCAGCAGATTACTCATACCAGCAGCAGTATCCTGACAATGTGGATGGGAGCCAGAGCTTTGCAGGCTATCAGTACCCATCAGGCTACCCAGCTGAAAGTGGATGGTCATCTGTTGAACAAGCTCCGCCCCGGCCAGTGACTCCAGAGAAGTACTCGGTCCCACATATGTGTGCAAGGTTTGGGCCTGGTGGTCAGCTGATCAAAGTACTCCCAAACCTGCCTTCAGAGGGCCAGCCTGCTCTGGTGGAGATCCACAGCATGGAGACAATGATGCAAGACACCCAGGAGCAAGAAGAGCTCAGGTCCTTCCCAGGGCCTCTAGTCAAAGAGGAAACCCACAAAGTTGATGTAATCAAATTTGCCCAGAACAAAGCTTTGGAGTGCCTGAGAAATGACAGCCTGGTTGATAAAGATTCGGCATATCTCATCTGGGAGTTCATTGTGTTGCTCTGCCGGCAAAATGGGACCGTGGTGGGAACGGATATCGCCGACTTGCTGCTGCGGGAGCACAAGTCCGTCTGGCTGCCCGGGAAGTCTCCGAACGAAACCAACCTCATTGACTTCAACAATGAACCCCTGGAGAAGGCCGAGGAGGACCCCAGCTTGGGCCAGCTCTCCCTGCTGTCTGACACCATCATGACCGATGCACTGGAGTCTGCCATGAAGAATGCTCTATGGGGGCATGCCTTATTACTGGCCAGCAAAATGGACAACCGAACCCACGCCCGTGTTATGACCAGATTTGCAAACAGCCTCCCTATTAATGATCCACTACAGACGGTCTATCAGCTCATGTCTGGTCGAATGCCAGCTGCAGCCACTTGCTGTGGAGATGAAAAGTGGGGGGATTGGCGTCCACACCTGGCCATGGTGCTATCAAATCTCACCCACACCCTGGATCTGGATACTCGAACCATCACCACAATAGGAGACACACTTGCTTCAAAGGGACTGACCGATGCCGCCCATTTCTGTTACATCATGGCCCAGGTTGGGCTTGGCGTCTACACCAAGAAATCAACGAAGATGGTTCTGATTGGAGCAAATCACAGTTTGCCATTTTTCAAGTTTGCCTCCAATGAAGCCATCCAGAGAACGGAGGCGTACGAGTATGCTCAGTCCCTGGGCTCTCAGTCATGGTCCTTGCCTAACTTCCAGGTCTTCAAGTTCATTTATGCCTGCCGACTCGCTGAGGTGGGACTCTCTGCGCAGGCCTTCCACTACTGTGAGGTCATCTCCAGGACCCTCCTCAGTCACCCGTCCTACTTCTCCCCCATGTTCATCAGCCAGCTCATTCAGTCCTTCATTGTGTTTACTACCAAGATATCCGCAAAGTTGCGATTCTTCGATCCTCAACTGAAGGAGAAGCCCGAGCAGGAGCTGTTTAAAGAGCCCGATTGGTTGGAACATCTGCGCCAACTGGATGGGCAGATAAAGGAAGGGGCGATCTCCTACAATTCAGACCGAGCCACTCCCCAGCAGTACGAGTGCAGCACCCCCAGCTCAGAGTTTGATCAGCCCAGCCCACCCAGTGGCCCGGGAATGCACCAGGATCCGAGTGGCGCTGCCCCAGAGAACCCCCTCATGACCTCACTGATGCCAAACCCAGGACCAGTGGTGCCAGGGGTGCAGCTCATGCCACCAGCGCCGCTCCTTGATGGAACAATGCCTTCAGGACCCCCAGCACCACCACCCCCAGCTGATGGGGGTGTCCAGTTCTACCCAGTGCCACCTGCTCCCCTGGGCCCAGTGCCAGGGTCTGCACCTCCTGCTCAAGGCCCCATGCCAGGATATCCACCTCCAGGGCTGGGGTATGGGGTCCCCTATCAGCAGGAGCAGCCAGAGACAATGTATCCGGTACAACCTATGCCCCTGCAGATGCCCCCACAGATGCCCCCTCCTGAGTCCCTACCCACTGTGCCAGAGCAACAGCACAGCTATCAGCCAGAGAGACGCTTGAGTTCCCAGCCATCCTCCCCGGCCAGAAGTACGTTCACCCCACATCCGCAGATGGATTTCTATGACCAAATGGTTCATATGGTCCCAGGAAAAAGATCTCGATCTACGTCACAGTCTTCAGTGTACACGTCCCACGGAAGACGGTCCCGCACCACCTCCGAGTCTTCCTGCCACTCTATTGGCCGAGACCGCAGCAACTCGGCAGCCAAACAGCCCTCCTCCCCCCCACCGGCGTCCATCCCCGAGCAGCCAGCCAGCAGACCAGAGGAGCCCAAGAAGCCCAGCAAGAAGGACTCTCCCAAAAAGGGAGGTAGAGGTGGTTGGTTCAGCTGGCTGTACCCCAAAGGGAACAATGAGGCTCACCTTCCcgatgacaaaaacaaaacgagtaagcctctcccccctcctccatcTGGCTTCCCAAAGATGGGCCCTCAGATGGGCCCTCAGATGGGCCCAGGGGGTCCAGGGGGGCCTCCCACTGAAGCTCCTCCAGTCAATATCTTCTCCAGGAAAGCTGGTACAAGGAGCCGCTACGTCGATGTCCTGAATCCCGGAGGGGCCGGCTCCAAGCCCAGCActgctgcccctgcccctgccgaCCTGTTTGCACCTTTGGCTCCAATGCCCATTCCTGCTAACCTCTTTGTACCCGGATCAGCTCCTGAAAGTCAGCAGCCCCTGGAAGGCAGTGTGCCCGAGACCGAGCCGAGCACCGAGCCGAGTACCACTGATGCACAGTCCCAGCCCCAGTTTTACAACCCTGGTTTGTATCCTCCTGGCTCAGATGGGACTTTACATCCAGATGGGACGCCCTCAGGGGAGCTCTCGCGTTCTAGCTCAATGAGCTCTTTATCACGCGAAGTGAGCCAGCATTTAAACCAGGTTCCTAATCAGCCACCCCCACAAGGAGGTCCCCCCACCGGAGGAGTGACGTTCTATAATCCTTCACAGTTTGCACAGCCAAGCGCACCGTCAGGAGGAGCCAGGGCAGGGAGATTTGGCCAGAGGAAGTACCCCGCATTGAAGTAGACGCCGTTTCCACCCGGAGCAAAATCGCGCAGTTCTGTAGGCAGACAATGAGGAATCGTGACATTCATTATGACAGAATTAGAAATAAGGCAACTTTAAAAGAGATCCTCCCTTCTCATGCTAGACTCTTTGGTAACTGGCCACCTTCACTTTGTAAGGACTTATGGTCATCATATCAGCTTTTCCtcctcatattattattattattattattatttatttatttttgctgttggAAAACCTGGAATGTTTCCAAGCTGATATTTCTATTCTTCACCTCTTCCCTGAAGTTTGGTGCCATGGCCTATTTAACAGGGGGGTTCCGGAGAATAAAAGAGAGCAGACCTCAACTGGAATGTCAGGCGAATGTTATTCCTAACTAATTCTTAAGGCTAATAACACAATGCTTCACACCAAACACTCAGATTTGGTGTTTGCCGGAGCAGTTCAGCCTGCTGTTTTGAGGAAGCAGAGGTGCCTTTTTCACCGCAATTATGCCGTTCCAGGCATTACAGTGAGCTTAGCTGCACACTAGTGTGTTCCAGGGCTTTCCTTTTGCACTGTGGGTGTGCGTTTTGGCACAGTATGCCTGGAGAGAATGCAGTGTCGCTGGAGACCTCACTTTCCTCATTAAGGCTGCAACTTCAATGAAGCCCATACCAGCTTGTAACTTTTCTTTGTTAGGATGGGTGCCCCTTATTGGTTGTTCCATGACACCTGATAGACTTGTTAGAGAGAATCTGTATCCATGTTtgcttgcatttaaaaatgcagagacTATGAATCCATCCTTTGTTTAAAAGAAGCCGTTATCAAAATATTGAGTTTAATAACAATGTTAAGGTCCATTCCAAAAATTAAGTCATAGCGAATGTCACTCTTCCTTATTTGTTTGCACCTTACAGATGAAATGAATATCTTAAGGCAACAGTAATGAAGATCTTAAACCACCTACCCAGCTATTGGTGGTAGCGAGGACCTCAGAGAAACATTATTCTGCAGCCTATAGGAATGACATCATACAATAGACATCATGGAAAAGGACACCTTTTAATTcaagtgctttttatttttaactgtagaTGAGTGAGAGTTTCAGCTTGTTACCACTGAGCAGCACAAGAGTCCTCTCGCATATCCCTTCTAATGAATCAAGTTCCCCTTTCAAACCTCAGTCCTGAAACTGTGACTCGTGAAATAAAACCTGGTTAAAATATTAAGATCTGTTTATTCTTTTCAATGCAGTACCTGTGTAGTTCATCTGAGATTATTAGTTTTATACTGTTAGTATAAAACCTGATGCTTCATAATCTAGGAGGTTgaactgatttttctttttcttttatttgttttaagtgcaATATTAGGACTTTCTCAAGGAATTTTGGTCAAGGGTTTTAGGAGGGGAAACGGCATGACAAAGAATTAAACTAAACTTGATGTTTACCAGTTAGgagtgttgtttttctcataCCTTTCCATACAGCTCTGCTATAATTAATTAAGGTCTTAATCTAAACGTTAACCAATCTAAAGTCAAGTAATTTCCAAACTGAGCAACTTTTGGCTGAAAATCGatagtaatttttttttcttcataaatttatctaaatatttgtatatctgATTCCGATTGTATTTATGACCTGTAGTCAAAATGTGTGCAAAGCAATTGATTACTATTTCTAATTTAACCttcatacacaatttaaaaaagtataatttaattgtaagaaAGAATTGTAAGAAGTATTCAAACATCTGAAAGGATATCACTTGGAAGGAATGTTGAGTGAGAAAGTTTTGCTCTAACCTCATTCTTTCTTTGGTGGACTGTCAACgtgatttattttcacctgTCAATCTAAATGTATCCAAATCCTTGCTTCCATATAGTTCATGAAGCTATCATGATATGTCCATGTAGACTGCTGAATACTTTTAATTCAGAAGGCTCTCTTTGTTGGAAGGGAGCTCTTATTTTTCGTAAAAGGTGTTAGAATTGACACTGTAAACttcttaacaaaaacaaataataaaaatattttgcgCTCTGGAGCACtttgaaata

Function

GO: NA

KEGG:

id description
K20353 SEC16; COPII coat assembly protein SEC16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76097 lncRNA downstream 8819 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 152146 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 359659 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 370385 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 373237 8793968 ~ 8796315 (-) True G60723
TU76105 lncRNA upstream 76100 9269560 ~ 9303247 (-) True G60839
TU76310 lncRNA upstream 734517 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 892453 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 1010379 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 1312948 10506408 ~ 10507637 (-) True G61098
AMCG00020079 mRNA downstream 2485 9162006 ~ 9167067 (-) True AMCG00020079
AMCG00020083 mRNA downstream 21241 9145242 ~ 9148311 (-) True AMCG00020083
AMCG00020080 mRNA downstream 24467 9137733 ~ 9145085 (-) True AMCG00020080
AMCG00020082 mRNA downstream 42484 9115473 ~ 9127068 (-) True AMCG00020082
AMCG00020077 mRNA downstream 86427 9077740 ~ 9083125 (-) True AMCG00020077
AMCG00020087 mRNA upstream 114449 9307909 ~ 9327357 (-) True AMCG00020087
AMCG00020088 mRNA upstream 207192 9400652 ~ 9444244 (-) True AMCG00020088
AMCG00020093 mRNA upstream 310926 9504386 ~ 9510745 (-) True AMCG00020093
AMCG00020094 mRNA upstream 348888 9542348 ~ 9547581 (-) True AMCG00020094
AMCG00020096 mRNA upstream 539523 9732983 ~ 9738219 (-) True AMCG00020096
TU75987 other downstream 329607 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 341443 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1606960 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2698118 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 2702966 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1562008 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2502231 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3290909 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3290909 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 3297238 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile