RNA id: AMCG00020087


Basic Information

Item Value
RNA id AMCG00020087
length 2538
RNA type mRNA
GC content 0.60
exon number 17
gene id AMCG00020087
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9307909 ~ 9327357 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGTGTCTTCGGTGACCTCCTCCAGCCACTCGGCCCCCTCCATGGTACACATGTGGATCTTCAGCACCTTCCCTGCGAAGATCTTCTCCTCCTGCACAAACATAGCTCCTCTCCTGCCCCGAAGCCCGAAAACCACGATGGAAGAAAAAAGGCAGACTACTCCGTTTTCACTCGCACTCGTCCAGTCAGAGGTGCGGAACACGCTGTGCGCCGAGCGAAGTGCCTCAgcaaaggcacagatcaggggctCAGGAAAGAGCAGCCAGGGACAGAGAGGAAAAGTAAACGAAAGAGCAGACAGGCAATGGCCACATTTCTTGACAAGCATGAAGCACCAGCACTACGTACTGCCATCCTCAGCTGCTGCCAGGCCTCTGACGCAGCGAGGTCATTCTTACGTCATCCAGCACGACATACTGGGCATTGCGTGCTGTGGCCCCAGTGACGACTGGAAAGAGCAGGAGCGCCAGAGAAAACTGGAGCGCCAGAAAGAGCAGGAGCGCCAGAAAGAGCAGGAGCGCCAGAGAGAACTGGAGCGCCAGAGAGAGCAGGAGCGCCAGAGAGAACTGGAGCGCCAGAGAGAACTGGAGCGCCAGAAAGAGCAGGAGCGCCAGAGAGAGCGGGAGCGCCAGGAGGAGCGGgagcgacagagagagaaggagcgCCAGAAATTGCAAGAGCGCCAGAAAGAGCGGGAGCGGCAGAAAGAGCAGGCCCGCCAGAGAGAACTGGAGCACCAGAGAGAGCTGGAGCGCCAGAGAGAGCTGGAGCGCCAGAGAGAGCTGGAGCGCCAGGAGGAGCGGGAGCGCcagagagagcaggagcagCAGAAATTGCAAGAGCGCCAGAAAGAGCGGGAGTGCCAGAAAAAACAGGCGCGCCAGAAAAAGCGGGCGCGCCAGAGAGAGCACGAAACCAGCCACAACCTGGGGGATGGTGCTGAGAAACACAGCCTCACTGCCACCTCCAGCAAAGGCAGCAAAGTGTATGTCTCCTTTGGATTGCTTACAGAGCGCCAGTCCTCCCCCTCGCTGAGTAGGACCTCTGTGGAGGGACGCCCTCCACCTGTtcccatctctgcagcactgcCAGTGGAGTCCTGCTCTGTGGTCCAGAGGCAGCACAGTCTcctgggGTTCCCAAACCTTGGGAAGACGTGCTACATGAACGCCACACTGCAGTGCCTGTTCGCTCTGCCCTCCTTCTGCAGGGACCTCCTCAGGCAAGAGAAATCATGGAGGAGGTCCCCCCCGACTCAGCTGCTCAGGTGTCTTGCAGAGCTTCTGGCTGCGAAGGACACGGCCAGCCTGGGCCAGAAGAAGCAGCTGCTGAGGAGAGTGAAGACCGCTGTCTCCACCGCGGCACCCTGGTTCTATGGCGACAAACAGAACGACGCTCATGAGTTCCTGGGCCTTTGCCTGTCCCAGATGAAGGAGCAGGGTGAGCCGCTGAATGTGGCCCAGAGTGTGGGGCTCCTGCGTGGGGATGCTGTTGAGGGATACACCTGCCCCGTGGTGACCAACCTGGATTTTGAGATCCATCACAACCGCAGCTGTACAAGCTGTGGAGCTCAAGTCATCTCCAGAGAGGCCTGCACCTACCTGTCCCTGGACATCCTGCCTCAGAGATCCGTCCAGGACTGCCTAGACCTGTATTTCAAGGAGACTAAGATCGAGTGCAGCTGCCAGAACTGCCCAGGACAGAGGGCCCTGGTCACCCCTCAAGTGCTAGTCCTGCAGATGAAGCGTTTCAGCTTTGAGGACCACAGCCACGTCCCCATCAAATTGCATGAGCGGGTGCAGATTCCCCTGGACCTGACCCTGCACCCTTACTGCAGGGAGGCTGTGCGGCCGCCCCGCGCTCTGGGCTGGACTGCAGAGCCCACCGTGCTGGTGGAGGGGCTGAGCGAAGACGAGCTGCTGGCGGCCGTGCTGCAGATGAGTCTGCGGGAGGGCTTGCCGTCTGCAGCCCCCTCAGCCCTGCGGGATGAAGAGCGACTCAGCAGCCCCGAGGCAGGACTGAGAGCggggcagagacacagagcCCCGCTCTCTGAGACGCTGCTCTCTGCAGAGTCTGCCCCTGTGAAGCAGCAGCGCCCAGAGGAGCCCCAACAAAAGACAGGCAGGGTAGATCATCAGAAGGACATGCCACCCAACCGCTACCGCCTGGTCAGCATGGTCAGCCACCTCGGGAGGAGCACGACCTCTGGTCATTATGTCAGTGATGCGTATAGCATTGCGCATCAGCGCTGGCTGGCATTTAATGACAACGAGGTGGTGGACACAGAGGAGAAGGCCGTGCTGGAGCAGGGAGAGAGGACTGGATACCTGCTCTTCTACATGCACAGTGATGCTGCAGAGGAGGTGTCCCAGTCCAGGGGGACGGATCAGGCTCATGGGAGGGTGCTGCTGCCTCCGGCCCTGGACGTGCCCCGGCCCAGGGCTGATGGAGACCCCCTGGCCCCAACCCCTCATCCTCCTGTGACCGTGTCCTGTATCAATTCAGTCCACTCCTCTGGCTACTTGCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76105 lncRNA downstream 4662 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 147176 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 290503 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 498016 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 508742 8798964 ~ 8799167 (-) True G60725
TU76310 lncRNA upstream 600620 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 758556 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 876482 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 1179051 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 1369261 10696618 ~ 10698099 (-) True G61136
AMCG00020084 mRNA downstream 114449 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020079 mRNA downstream 140842 9162006 ~ 9167067 (-) True AMCG00020079
AMCG00020083 mRNA downstream 159598 9145242 ~ 9148311 (-) True AMCG00020083
AMCG00020080 mRNA downstream 162824 9137733 ~ 9145085 (-) True AMCG00020080
AMCG00020082 mRNA downstream 180841 9115473 ~ 9127068 (-) True AMCG00020082
AMCG00020088 mRNA upstream 73295 9400652 ~ 9444244 (-) True AMCG00020088
AMCG00020093 mRNA upstream 177029 9504386 ~ 9510745 (-) True AMCG00020093
AMCG00020094 mRNA upstream 214991 9542348 ~ 9547581 (-) True AMCG00020094
AMCG00020096 mRNA upstream 405626 9732983 ~ 9738219 (-) True AMCG00020096
AMCG00020097 mRNA upstream 411481 9738838 ~ 9741015 (-) True AMCG00020097
TU75987 other downstream 467964 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 479800 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1745317 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2836475 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 2841323 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1428111 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2368334 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3157012 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3157012 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 3163341 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile