RNA id: AMCG00020093


Basic Information

Item Value
RNA id AMCG00020093
length 828
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00020093
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9504386 ~ 9510745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGTTGCATTTGTCTTAATCGTGGCAGTGGGTGGCTGGACCACAGATGATCCCACATCCCGAGTGGAGAGGTACAACATGCTGCTAAATGAGTGGAAAGTCATGGCCCCCATGAGGACCCACAAGAGTAACATGGCGGTTGCGACTCTTGGGAATTTGATCTACACCGTGGGGGGCGATGATGGCGTCTCTTGTGTCAGCAGTGTAGAAAGgTACGACCCAAGGGCAAACTCGTGGAGCAGTGACGTGGCATCTTTGAGCAGTGCGAGGCGTCGCGTTGGGTTGGCAGCCATGGACGGCTACTTGTTTGCCTTGGGTGGACATGATGGTCTTATCTGTACCAACGTTGTGGAAAGATTTGATCCCCAGGTGAACATGTGGTTCAAAGTAGCACCGATGCACTGCCGGCGTGTGGGAGCTGCAGTAGCAGTCATAGGTGGATACTTGTACGTACTGGGAGGGAGTGATGGAGACGCACCTTTAAACAGCGTGGAGCGTTACAACCCCTTAGAGGACTGTTGGACGGCCTGCCCTGCTATGGGGTCCTGGAGGGAGAATGCTGGCTGTACTGTCTTTCAGGGCCAGATCTATGTGGCTGGAGGCCGGGATGAAATTCAGGAGCTGAACACCGTGGAGAGATTTGATCCCCAGACGTTCAGCTGGTCCCCCGTGAAGCCCATGACCTGCAAGCGCAATCGGGCAAGTATTAAGAAAGTGGCCCTGGTTGGGATGAATGAGTTTCTTTTAGCTGCTGGGGGGTTTGATGGCATCACAGACTTAAAAACTGTGGAAGTCTACAATTTTGAGACGAACACATGGAGGTAA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76105 lncRNA downstream 201139 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 343653 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 486980 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 694493 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 705219 8798964 ~ 8799167 (-) True G60725
TU76310 lncRNA upstream 417232 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 575168 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 693094 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 995663 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 1185873 10696618 ~ 10698099 (-) True G61136
AMCG00020088 mRNA downstream 60142 9400652 ~ 9444244 (-) True AMCG00020088
AMCG00020087 mRNA downstream 177029 9307909 ~ 9327357 (-) True AMCG00020087
AMCG00020084 mRNA downstream 310926 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020079 mRNA downstream 337319 9162006 ~ 9167067 (-) True AMCG00020079
AMCG00020083 mRNA downstream 356075 9145242 ~ 9148311 (-) True AMCG00020083
AMCG00020094 mRNA upstream 31603 9542348 ~ 9547581 (-) True AMCG00020094
AMCG00020096 mRNA upstream 222238 9732983 ~ 9738219 (-) True AMCG00020096
AMCG00020097 mRNA upstream 228093 9738838 ~ 9741015 (-) True AMCG00020097
AMCG00020098 mRNA upstream 270070 9780815 ~ 9783436 (-) True AMCG00020098
AMCG00020100 mRNA upstream 282061 9792806 ~ 9799158 (-) True AMCG00020100
TU75987 other downstream 664441 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 676277 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1941794 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 3032952 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 3037800 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1244723 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2184946 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 2973624 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 2973624 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 2979953 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile