RNA id: AMCG00020094


Basic Information

Item Value
RNA id AMCG00020094
length 2021
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00020094
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9542348 ~ 9547581 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacttGCAATTCCAGGTGCCTGCACTGCACATGTACTCTCGCGGTATTTTACGATACCTTACAGTTTGCAAGATGGCGGCTTCCATAGAGGATCTGCTGTTGGAGATTTCTGGTCTGGAAGAGCCACTGGAAGAATTACGCAATTTGAAAACGGCTGTTTTAGCAATCCCCCTGAACATCCTGGGAGAGATCGTGTCCGGTCTGCGTCTGGAAGTCATTTTCTCGCTTTTAAACAGCAATGACAGGGAGcagacagagctgtgtgtgGCCATCCTCATGCGCATCCTGCAAGCCCTGGATCCAGTCAATCTGGTCCAGAACTTCAGGGCAGAACTGCTGAGTGGACTGAAGCACCCGGATGACACTGTCAAAATACTGGCCATGACTCAAATCGGGAGGATTGTTGAACACACAGAGGCTATGACAGAAATCGTGAATAGCCAAGAGCTGTTGAAGGAGGTCATTCACTGTAtcggaggggaaaaaatatctGTTGCGAAAGAGGCCATAAAAACACTTTCCAAAATGGCTCAGACAAAATCAGGATTGGATGCCTTATTTATGAGCAACCTGCAGAAAGACTTAAAGGACGTGATGACCACAGATGATGTGATCCGGTACAGGGTGTATGAGCTTGTCATTGAGATATCATCCGTCTCCCCGGTCTCGCTTGGTTACTGTGCGAACAGCAGCTTTATTTCCAAACTGATCGGAGAGTTAACAGGTGATGACATTCTCGTTCGAGCCACAGCAATTGAGATGGTAACAACACTCGCCCACAGCCAGCATGGAcgacagtaccttgctcaacaAGGCATTGTGGATAAAATCTCAAACATGATCATTGGAGCTGATTCAGACCCATTTTCTGCCTTCTACTTACCAGGGCTGGTGAAGTTCTTTGGAAACCTAGCTATCATGGACAGTCCACAGCAGATCTGCGAGTGCTACCCTGCCTTTGTGACGAAGGTATTTGAAATGGCCACAGGACAGGACACTACGATGATCGGAGTAGCACTGGATACCTTGGGGATACTGGGGTCAAATGTTGAAGGAAAACAAGTTCTGCAGAAAACAGGTGAAAAGTTCCAGCAGGTCTTGAAGAGGATGAGTCAACTGGCAAAGAATGCCGCAACCGAGCTGCGTGTGCGCTCTTTAGAGGCAATTGCTCTCCTCCTCGCTCTACCAGCTGAGGATCAGACAGAGGACCTGCTGGGCTTGACGGAGTCCTGGTTCTCTTCCCTGTCTAATCATCCCATGGAGATGTTAAAGGGCATCAGCACCCAGCCCTTCCCAGAGCTGCACTGCGTTGCTCTGAAGATCTTCACTGCAATCGCTTGCCAGCCCTGGGGTCAGAAAATTATGATTGACACTCCCGGGTTCGTGGAGTTCATTGTTGACCGCTCAACAGGACCCGACAAGGAGTCAAAAGATGCCAAATTTGAACTTGTGAAAGCACTTGTAAATTCCAAATCTACGGCCGAGATCTTTGGGAACCAGCACTACCTGCGTCTCCGGACTTACATGCGTGAAGGACCATATTATGTGACGGCCGTGTCATCTGTCATGGTGGAAGGTGCAGAATAAACATGAAAGACCTCAAAACAAAATGGCGTTCTCATTTCACTGATTCAGTAATGAGAACGATGTATGAAATGATAAATTGGGGgtaaaaaggtgtttttttttctcaaaacattttGCACTAACATTTTGtatgcaatattttatatacattaaaagaaTAGATAAGCCctgagtatatatttttttaattttagatttaattggtatttattaaaacataaactgaatttaaatggtGATCTACAGCAAAGCAAACTCATGTTGCCTTGTAAGTATGAGAGACTTGTTGAAGGACTAGTTTAATGTAACAAAGTAATTTATAGTACAGATTAAAATGGCTTTCTTTATAGGCTACTAGTGTATTTTCACAAAGTAAAAAGTGTTTTGATGTTACTCGTGTGAATTAATCtttattaaaacttttaaaGACAATA

Function

GO: NA

KEGG:

id description
K06692 PSMD5; 26S proteasome non-ATPase regulatory subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76105 lncRNA downstream 239101 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 381615 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 524942 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 732455 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 743181 8798964 ~ 8799167 (-) True G60725
TU76310 lncRNA upstream 380396 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 538332 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 656258 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 958827 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 1149037 10696618 ~ 10698099 (-) True G61136
AMCG00020093 mRNA downstream 31603 9504386 ~ 9510745 (-) True AMCG00020093
AMCG00020088 mRNA downstream 98104 9400652 ~ 9444244 (-) True AMCG00020088
AMCG00020087 mRNA downstream 214991 9307909 ~ 9327357 (-) True AMCG00020087
AMCG00020084 mRNA downstream 348888 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020079 mRNA downstream 375281 9162006 ~ 9167067 (-) True AMCG00020079
AMCG00020096 mRNA upstream 185402 9732983 ~ 9738219 (-) True AMCG00020096
AMCG00020097 mRNA upstream 191257 9738838 ~ 9741015 (-) True AMCG00020097
AMCG00020098 mRNA upstream 233234 9780815 ~ 9783436 (-) True AMCG00020098
AMCG00020100 mRNA upstream 245225 9792806 ~ 9799158 (-) True AMCG00020100
AMCG00020106 mRNA upstream 279185 9826766 ~ 9852546 (-) True AMCG00020106
TU75987 other downstream 702403 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 714239 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1979756 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 3070914 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 3075762 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1207887 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2148110 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 2936788 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 2936788 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 2943117 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile