RNA id: AMCG00020096


Basic Information

Item Value
RNA id AMCG00020096
length 3345
RNA type mRNA
GC content 0.37
exon number 8
gene id AMCG00020096
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9732983 ~ 9738219 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGAAATGACACGTCACAGCAGCGTCGCGATCTGATGAGGTCATCATGTACACGAACATTGAGACCGTAGCTGGACTTCCACATCCGAATTACTGCATAGTTTGTGGAGTTTTTCTTCTGAAGTTTAATAGCCAATTTACAAAACATGGCAACTGCAGATCCGTGTAAGGTTTCTTCCTTGAAAGGGAAAGTGACACTAATCACAGGAGCCAGCTCAGGAATAGGGGCTGCAACCAGCATTCTGTTTGCCAAGCTAGGAGCACAGCTGGCATTAAACGGGCGAGACGTGGAAAACCTTTCCAAAACAGCCAAGCAGTGCACAGAAAACGGAGGAGCCGAGCCACTGTTAGTACCAGGTGACCTGACAGATGAAGAGACCGTGAAGAAGACTATTGAGAAGACCATCTCTCACTTCGGGAGGCTGGATGTGCTGATAAACAGTGCTGGAATCCTGGCCATGGGAAGCATTGAGACCACGGACATGGTGCAGTATGACCGTGTCATGGACATCAATGtcagGTCCGTCTACCATCTCACTCACCTTGCTGTCCCCCATCTGATCAAATCCAAGGGGTCCATTGTGAACGTGTCCAGTGTGAACGGGCAAAGATCGTTTCCTGGCGTACTAGCCTACTGTATGTCAAAATCGGCCATTGACCAGTTCACAAGGTGCACAGCATTAGAACTGGCTCCTAAGCAAGTGCGTGTGAACTCTGTCTGTCCCGGTGTGATCGTCACTGAAGTGCACAAACGAGCAGGACTGAGTGAAGAACAATACGCCAAGTTTTTAGAGAAATGCAAAGAGACTCACGCTCTGGGACGCCCAGGAGAAGTGGAGGAGGTCACACAGGCCATTGCTTTCCTGGCATCGGATGCAGCTTCGTTCATCACAGGGGTCAACTTACCCGTGGATGGGGGTCGCCATGCCATGTGTCCACGATAATCAACCGGTCCATAATTGTCTTATGGTGCCAATTGCTTCTAGTCACAGTACCCTTTAGAATGAAGTTAGGGGACAATGTCTACCTGATCAGAACATCTGAACCTTCCAAGAACAAGTGCCCCGTTCTCAAATCCACACCTTGTAAAGAACGTGTCTGCTCACCTCAGATTTGTATGAATTGAGATGAACCACAAATATTTAACTAATGTTATGAAAGTAATATTTTGAGTGTGTGATGTCACTAGGTTTAGTCTTTATGATTGCTACCTTCTAAACTAATGTAATACTTAATTCTTCCCTCCTTTGATTCGCTTCTGCAGTGTGTGACATTAGAAAAAATCGCCACCTGGTGGCCACTTCAAGGAACACAGACGATGCGGTTTCAGTCTTTAACTAGGTGGAAAACACctagaaaaataatttagtaaGTTGAATGCAAGCAGTGattaacaaacatctgtatCTGCTTAACAAATCCATTGTACCCAGGTCCCATtgctttaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataggtgtGTAGTGATATAGAAGTTGGCCATCTTAGAGCAGTGGGGTTTTGTCCTGTGTCTTTGTACCGAAGAAACAAATGCACCATCTATTTCAATCTGTTCGATATAAATTCACACTGCTATGTGAGATGGGCAATGTATGAGGTTTGCAAGTAATTGGCTTAGCTATGAATTATGTAAGGAATGACACAGGATGAAAATGCGGAATAGAAAATTTAATTGCAGGAGTAAGTGTTAACGAAATGAATCGTAAACATTAAAGCCCAGTTCATTTGCCTaagtttcaaatatttattgaacatCTGAACATTGGTAATGCAAGACAATGGAAAGTATTGGAAATGGTGTATAAGAGAAGACAGGAGAGCTACAGAAACGAATGTGGGTAGAGCATTGACAATCACTGTACTTCCGGTCAGAGAAATGCAATGTTGGcggatgatgtttttttgtggCAGATATTTcagatacagacacagaatttatgtaaaacaaaaataaaacaaaacaaaaaaacatgaatgctaccaggtgtgtgtttaaatgtgagGTATTCTGAGCTCATTTTCTTTACTTGTTTTATCTACTGAATTTTACCATTGACCAAATAGAATAGAACTTTCACATATTCttcatatatttctttaaaaaataaaaaaccatGATAAGTGTAAAAGCATAGAACACAGtcccagtacagtacagttatgATTAtcatatagaaaaaaaaagaataaaacatacaaacaaacaacaaaacaaaacaaaaaaccactgaaatatttttttcttttggagcACCAAATTTACACATAAAATAGCAAAATTAGAATTCTATAAACTCCAACACCAGTTGGGAAACTGATACATAAAgttatcagaaaaataaaataaaataaaaaaaatacaattattaactATTCCCTAACAAAGAAAACCTTACTAGGTCAACATAACCACGTTttcaaaacacttaaataacattaaattagcAGGTAGGGATCCACTGTATACAACAAAGCTTGCacaattatacacattttatttttcaacaacaaaaaaagcttaCTATTAAAACTAAATCTTCACTAAAgtttttttaagatattaatTACAGCTATTGGGGGATTTGTACAAAAGAGCAGAAACTGTTATAAAAAAGACTGCTTTAAAATTCTGTATGGAACCTATGTACGGCAGCATGAGAGATAAATTCAgttcttttttctatttttttaaatttatataaaaatattcccTTAAAAGTATTATAGGcacttaaattaaatgcagttttcaatttaattttcttcagaaTCGCGTGAAAGCaaagttgtaaaaaaaaaaaaaaaaaatcaaaagcctAACACAAAAGCtgcaagtgtttttgtttgttttaaaggttttttttgtagCAGGAGAACAGAGCACCAGATAACTTTCTTGTTAAGGTATTTCCCGAGCACCATATATTGTGAGATGGGAGGTAGACAGTATCAGAAAGCCCCTTCAGGAGTAATTTATAGTAATGTTTTCCTTCCAATAACTAATCTTTACATCAGGAATTTAAAAgtgtatacaaacatacaataatattgggtaatgtgtatatgtttgaCTGCCTTGTGAGTTAAAACCCCACCAGGTTGCAgactaacatttatttaatgagtaATTTATGTAGGTACGAATGGCAGGGCGcaatcaagttaaaaaaaaagtttaatacatttggaTGGATCCAAACATGAAGTTAAAACAGTTCCCCTGAATTGACTGAAAGCTaagaaatgcacaaacaaaagatgaaattaaaaaaatctccttttctattgcactttaacatgatttgtttatataagata

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76105 lncRNA downstream 429736 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 572250 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 715577 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 923090 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 933816 8798964 ~ 8799167 (-) True G60725
TU76310 lncRNA upstream 189758 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 347694 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 465620 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 768189 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 958399 10696618 ~ 10698099 (-) True G61136
AMCG00020094 mRNA downstream 185402 9542348 ~ 9547581 (-) True AMCG00020094
AMCG00020093 mRNA downstream 222238 9504386 ~ 9510745 (-) True AMCG00020093
AMCG00020088 mRNA downstream 288739 9400652 ~ 9444244 (-) True AMCG00020088
AMCG00020087 mRNA downstream 405626 9307909 ~ 9327357 (-) True AMCG00020087
AMCG00020084 mRNA downstream 539523 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020097 mRNA upstream 619 9738838 ~ 9741015 (-) True AMCG00020097
AMCG00020098 mRNA upstream 42596 9780815 ~ 9783436 (-) True AMCG00020098
AMCG00020100 mRNA upstream 54587 9792806 ~ 9799158 (-) True AMCG00020100
AMCG00020106 mRNA upstream 88547 9826766 ~ 9852546 (-) True AMCG00020106
AMCG00020107 mRNA upstream 135230 9873449 ~ 9890563 (-) True AMCG00020107
TU75987 other downstream 893038 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 904874 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 2170391 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 3261549 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 3266397 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1017249 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 1957472 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 2746150 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 2746150 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 2752479 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile