RNA id: AMCG00020100


Basic Information

Item Value
RNA id AMCG00020100
length 3352
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00020100
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9792806 ~ 9799158 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGAACTCAAGTTCGGTTGTGTTATTACTGTACAAAGGAAGACGATCTGCTGGGAGCGGTGTGTGTTTGGATTCAGATAGATTTAATTCGTGTTGTGAGGTTTGTAACGATGACTACCTTGGACGACAAAATCCTGGGGGAGAAGCTGCAGTACTACTACAGCAGCAGCGAGGACGAGGACAGTGACAAGGAGGAGGGCAACGAGGAAAAGAGCATCCGCAGTTCCGATGCGCTCGATGACGAAATCGACTACAGTGCGGATGGCAGTGCTGTGAATACCGGGCCCAAGGGCGTCATAAACGACTGGCGCAAGTACAAGCAGCTGGAGATCGAGCAGCGGCAGGAGCAGCGCAGCGAGATGGAGACGCTAATAAAGAAGCTGTCCATGACCTGCCGCTCGCACCTGGACGACGAGCGTGAGAAGGAGAAGCAGAAGGAGCTGCAGGAGAAAATCAACGGCAAGATGACTCTCCAGGAGTACAACATGCTCCAGGAGGACAATGATGATGAGGACTTCCTGCAGCAGTACAGGAAGCAGCGGATCGACGAGATGAGGAGGCAGCTGTACAGCGGCAAGCGCTTTGAGCGTGTCTTCGAGCTGGCCAGTGGCGAGGGCTTCCTCGAGACCGTGGACAAGGAGGGCAAGGGCACCATGGTGATGATCCACATCTACGAGGAGGACATCCCCGCCTGCGAGGCCATGACGGGCAGCTTGATCTGCCTGGCCGCCGAGTACCCCCTAGTCAAGTTCTGCCGCGTCAAGAGTTCGGTGATCGGGGCCAGTGCCCGGTTCACGGGCAACGCGCTGCCCGCCCTGCTGGTCTACAAGGCCGGGGATCTGATCGGCAACTTTGTGCGCATCACCGACCAGCTGGGCGAGGACTTCTTCGCCGTGGACGTGGAGGCCTTCCTGCAGGAATACGGCCTCCTGCCCGACAAACAGTCTGTGATCCCCACCTCCATCCGCAATGCCTCGGTCAACTGCCCCGGAGGGAGCGACGAGGACAGCGACCTGGATATCGATTAGCCGCAGTGGGAGAGTGAAGATTTTATACAGCAAAAAGATCTAGACCACTGCGTAGTTGGCCCACACTGTATATACTTGTTTAGGATCTTCTGTGTCCTATCCATGTGTACTGTTCAAACTCTTTCAATATTTACTGAACttcctttttccctttttttttatcccagttTAGGTTTATATTTGGAAAACACTCCCCTCATACAAGCTGCTTCCAGTCTGATTATGCATACAGTTGAATCCCACCCATGGTCCCGAGACACTTCACCATGTGACTgggttattatttttccttggtTGTTATGCACATCTGAATGATCACCGAAACTGCGGTTTGTTATGCCATAAACCTTGCTTGACTGTTCTGGACGGCTGTAATTAGGGGGAGTGGATTGTTATGCTGCTAAATTCTCACCAGTTTCTCGGACTAGTGTATTATGTCTAATTGACCAGTGAaagtagaatatattttattgtccaAGTCAAGCAAgttcttttaaaatgaacactgcctcaaaagaaacattatttgtatattattgatatgcaaattaaattactttggGGGGCTGATTTGAAAACGGAAGTTCTGTTTATCTCTACTAATTTAGCAAAGATCGAACGCTGCTTTAGGTGAAAGGCTTGACTGGGTCATTGCTGATGCTGcgattgtgttttaaatcaattatgTTTGTGTCCAGATCTATAACAGGCTTGGCATTGAAAGTTAACCAACAAAAAGACTGCATTCTTTGCAGCACTTACAAAAAGCACATTAACTCGTACTCAGTCCTGGCCTGAAGGGCACTGTAATACCCTGGATGCACGGAGATACAGCACAATGGTGACAGGAACCTCCGTTAATCTGTACTGTAAAGCCATCTAGCCATAAACATCACAGCATAGataccttttttccttttctttactgTGACTTCATTAAAActatatgattttaaaatgctttagagAAGAATTGTCAAAACTCCAAACCCTGAGGTCAGTAGATGTAAATTGTAAGCTGCGAAAGACCTGGAATAAAAGGAGAATCGGTCCATGAAGTTCAATGAAGCAACTGGAAGCTGTAGGTGGAATGAAAGGCGTTCGGGCTTCAAGGACTACAGTCTGATGGGACTGCTTTAGAGATTtgacttatttatgttttattattgtgtccCTTTTTTGGGTAAATGAAACCAGCTTTTAGTAAGAGCATatctatttgtgtttgttagttttatttatttatttactgtgtaaGAAAAGATCAAATGGAGACCAATTCAGGTGTCTGTGGCCTAGAGAGGGAGCACACCAATACCTACAGCTACATGCAAGGAGGTCTGGGGTAAATTGGCTGCTTCTTGTTTCAGGACCAAGAAAACtgtcatttcttgtttttgatttatctAAATTctaattgcaaaacattttttgagtGGGGGAGGATCTTTTCAGCTTGTTCAATAAGGTTATGCAAAATGCAAAGATATATAGTCCCCTTTATTGTATAGCACtgcattcataattcataaaagctacatgtgtttgtttatataattttaaaagcatcatGGCAAGTTGTGAGCATGTGTGTTGAAATGTGTAgaggttaaaaacaaactaaaagctTGTACTAATTAGTCacctgcttattattattaataataataataataataataataataataataatattatatctGTAGCCCAAGTCAGTGCTGTATAGGTTTTCTTAGTTTTATACCTTTTGTATGTCCCACAGACTCCAAACCTTgagaaataattgtaaataaatctttaatcaAGTCTGGATTCAGcttgtttattgtatttggtATTAtgaatacaaactaatgatgcTATCTGTGCAAACTGTTTCCTGGTTTGTTCtggactgaaaacaaaattaaggcAAGATGTGATATTAGCATTTTGTGCATACATTTAACTGTAAATGCAGTGTTACTTCCCCCTGCTGACCAGTTTAAGAATTACACACACAGCCGATTTTAGTGCATCTGAAGTGCTGTCAGGCTTCTTCTTCCAGAATGATTGTTCCCTCACTCACCTGTGTCCTCACTGAGGCTTCAAGTGTAAAAAACTcctgtaaatgcattttgttatatatatttcttccttGGCCATGTCTTACTGTTGATTTCACCATGAAACACTACAGTTAATAGATACATACACATGACTAAAAGGCAGTGGATTGTACCATAGGTCAGTATGTAACATTAATTGGAGTTTTATGGTGAGGGCCCATGCATCAAAGTATTAATGCATGTGTAGCagacagtaaaataaatgaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76105 lncRNA downstream 489559 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 632073 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 775400 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 982913 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 993639 8798964 ~ 8799167 (-) True G60725
TU76310 lncRNA upstream 128819 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 286755 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 404681 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 707250 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 897460 10696618 ~ 10698099 (-) True G61136
AMCG00020098 mRNA downstream 9370 9780815 ~ 9783436 (-) True AMCG00020098
AMCG00020097 mRNA downstream 51791 9738838 ~ 9741015 (-) True AMCG00020097
AMCG00020096 mRNA downstream 54587 9732983 ~ 9738219 (-) True AMCG00020096
AMCG00020094 mRNA downstream 245225 9542348 ~ 9547581 (-) True AMCG00020094
AMCG00020093 mRNA downstream 282061 9504386 ~ 9510745 (-) True AMCG00020093
AMCG00020106 mRNA upstream 27608 9826766 ~ 9852546 (-) True AMCG00020106
AMCG00020107 mRNA upstream 74291 9873449 ~ 9890563 (-) True AMCG00020107
AMCG00020112 mRNA upstream 132592 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020117 mRNA upstream 428336 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020123 mRNA upstream 739124 10538282 ~ 10540365 (-) True AMCG00020123
TU75987 other downstream 952861 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 964697 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 2230214 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 3321372 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 3326220 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 956310 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 1896533 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 2685211 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 2685211 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 2691540 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile