RNA id: AMCG00020107


Basic Information

Item Value
RNA id AMCG00020107
length 2436
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00020107
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9873449 ~ 9890563 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTACTGGGATGTACCGTTCTTCAGCCTGTTTTCGGACATGCTTTGAGAGGACATTTCAGTTGCATTGTGGGGTGTGACACAGTGATGGCACTAAGTCGTGTTGGCCTGCTGCGGCCAGTGCTGGGCAGATCCCTGCCGATTCTCGCGAGGTCGCCGCTGCAGCCCAGCGTGGGCCGCTCTGCCCTCCTCCAGTACGGCTGCCGGCAGTGTGAGGCCCTTTTCTCGGCTCAGAGCAGGCTTTATGCAACCAAGAAAAGCAAAGCTAAAGGGAAAGGCCAGGCTAAAGTGAGTATCAATGCAGCACTTGTGGAAGATATCATTAATCTGGAGGAGTTGAAAGACGAGATGAACACAGTGATGGAGAACCTCAAGCAAGATTACAGCAGGCACTTAAACATCCGCTCTTCAGTCGGTACATTAGACCACATTTCAGTGAGCACAAACGATGGGAAGTTTCCATTAAACCAGCTCGGGCAGATTTCCATGAAGTCTCCTCAGCTCATCCTAGTAAATATGACCAGCACCCCAGAGGCTACAGCAGCCGCCGCGAAAGCCCTCCGAGACAGCGGCATGAACCTAAACCCCGAGGTGGATGGGACCATGATCAGGGTGCCAATTCCTAAAGTAACAAGGGAGCACAGGGAAAACCTGGCCAAGCTTGCAAAGCAGTTCAACAACAAGGCAAAGGAGTCCCTGAGGAGAGTCAGAGCCAACGCGGTGAATCAGGTGAAGAAATCGAAGGACGACGTTTCAGAAGATACCATCAGGTTAATAGAAACTCAGATTCAGCAAATGGCAGATGGTGTTGCAGCTGACATGGACAAACAACTTGCAACAAAAACCAAGGATCTTTTGGGATGAGAGTAACGGGAGCTGTtctgatttgttgttttcttctgtgtaaGGGTCTACAGAAACAATCCTGTTCGTATATAGCCCCGCAAGTCTGAGCtggagtgaaataaaaaaaatataataatttaaaaaataatctctgcACGTTGATAATTTGTGTCTCCAAAAACTGTTTGAGCAAGCGCCATAAAGCCATTatagagtatttatgtatttcactCAGGCATAGACAAATCTTGGCATAGCACTTTATTGCTTGCTGGCTAATTTCTCTACACATTTTCAAGCAAGCAActaaaaaaactatacatttttttttatatgtgatttTGGTCctccttttaattaaaaccaaaaccacaAATATTGTTGACTTTTACATGTGCCACATTTACTGTAAACAGCTTGGTAAGGGCGTTGGGGCTTTAAAAGTGTCAAGATTATCACCAGCATTTGATTGCCATTCTATTGAATGGATTTTGCTCATTTAACCAGTCTCCCCCACCAGCATTAAGGAGTTCTACTAAAACTaccaaaataaagtaaaactaaaGCAATATTTATGTTCAGTTTGTTCTAGAGAGCTCTCACCTCATatatgtttctttaaattattgaatttcATTTCCAAAAGTTTTTACACCCACTTTATTTGCCCCTCTTACTTTGATATGCAGTCTATGCATGAGCACAGGGGGAAGAGTGTCTTCTGATCTGTCTCTCTTCATCTGGAAAACCTGATGACTGAAATGTTGCCAGACAGTGCAATCTGCATTCAAGAAAGATGAATGCCCTAAACTGCAGGATAGAATACAGATTTGCATATGGCCcgatttgcctttttttttttaatctgttaccAACGTCCTAAAATCAGTTTCGACAGCAGGGCGCTCACTGTCTAGTATTATTTTGCTTCATACACACTGACACCTAGCAAACTGTCACCTGGTTATGCCAAGAGAACGTCTTGCAAGCTGTTTCCCATCCTATTGGGTTTGACAGTTTGGGAATTGAGTGTCTGCAGTTTGGGAATGCTGAATTTAAATCAGATCGGGTTGGATGTCGAGACCAGAGGTGACTCATCCATATTCAATCCTTGATTTAGTGGTTTGGTTAAAGCGTTGAAAGGAAATTTGAATTGGGCAATCCGTTTGAGGAGAAAAAGTTAGTGGAAGAAACGGCGCTGGGTGGACTGACGTGTGATCATAGTGTTGGATGATACTTAATAGAGGTTTTTATCTGGAATGCTAGACTTGGAGTATTAAAATGCTTGGAATATGAAACATTATCAACATGTTATGCAAACAGTCTGAAATCACATGGGTGTCTCTGGCCACAGTTGAACTGATATCAGCAGTAGTTTGGGGATTTCAGTGTGAGTGGTTTAATTCATATGCCCCGACACAAAACTGTAATCCCAGTATTAAAGCTATCTCCTCATAAGAAGGAATCCTCTTCaataaacaaaggaaataacACATTATGTAGGACCTCCTATCTaaggcattgtttttaatggatgaaaatacaatgtggtctttaaataaacaaaagtttatttcatctACAGACAag

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K02838 frr, MRRF, RRF; ribosome recycling factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76105 lncRNA downstream 570202 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 712716 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 856043 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 1063556 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 1074282 8798964 ~ 8799167 (-) True G60725
TU76310 lncRNA upstream 37414 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 195350 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 313276 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 615845 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 806055 10696618 ~ 10698099 (-) True G61136
AMCG00020106 mRNA downstream 20903 9826766 ~ 9852546 (-) True AMCG00020106
AMCG00020100 mRNA downstream 74291 9792806 ~ 9799158 (-) True AMCG00020100
AMCG00020098 mRNA downstream 90013 9780815 ~ 9783436 (-) True AMCG00020098
AMCG00020097 mRNA downstream 132434 9738838 ~ 9741015 (-) True AMCG00020097
AMCG00020096 mRNA downstream 135230 9732983 ~ 9738219 (-) True AMCG00020096
AMCG00020112 mRNA upstream 41187 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020117 mRNA upstream 336931 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020123 mRNA upstream 647719 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020125 mRNA upstream 654222 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020124 mRNA upstream 740729 10631292 ~ 10647839 (-) True AMCG00020124
TU75987 other downstream 1033504 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1045340 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 2310857 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 3402015 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 3406863 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 864905 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 1805128 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 2593806 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 2593806 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 2600135 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile