RNA id: AMCG00020117


Basic Information

Item Value
RNA id AMCG00020117
length 2906
RNA type mRNA
GC content 0.46
exon number 18
gene id AMCG00020117
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10227494 ~ 10261824 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCATTCATGGCTGTTCTCTTCTACCTCACCAGGTGACTTTCTCCAGGAAGCTTCCCGACGAGACTCCTCTTTACTATTTTAATATCCCAGCTGTCAGGGAAATTTGAGGGGAGCTTATGAAGAAGTTGTGTCTGGGGAAGCAGCGCCTTGTGAAGACCACTCTGAGCGAGACCCAGAGATCAGAGGgcgaggaggaagaggaggcagaaGGCACTCTGTCGCAGCCCAGCGCACAAGCATGGAGCACCCCCAGGGCTAATCCAGACCTGCCTGTGGGAAAGTGGTGTGTGTTTGATAGATCTATTCGATCCTTTGCTAACGATGATCGCCATGTTATGGCAAAGCACTCCACAATCTACCCGTCCTCTGAAGAGCTTGAGGCCGTCCAGAATCTGGTGTCCACTGTGGAATGTGCATTGAAACATGTCTCGGACTGGATGGATGAGGCCAACAACCCAGCAGAAGAAGCAGAGGATGTTAAGAAGGAGGAGTGTGCAGAAAACAGCACAAAGGAGCAGAGCTGTGGGGTCCTGTGTGGTGTAATGAGAATTGGGCTGGTTGCTAAGGGTTTGCTGATAAAGGAAGATATGGACCTCGCGCTGGTACTCATGTGCAGAGAGAAACCCACTGAGACCTTATTATGTACAGTCTGCGACAACCTTCCTCTACAGATCCAGAAACTTACAGAAGACAAATATGAAGTGGAGAAATGCATAGAAGAAGCTGCGATTTTGGTCTGCAATACTAAGGAACCTAAGTTAACACTGAAGGTGGTACTCACCTCCCTTCAAATGAGAGACGATCTGGACAAGAAAGATGAAGTAGAAAATGTTGCGATGAAAGATCCACCGGACTTACTGGACAGGCAGAAATGCCTAAACGCCTTGGCGTCTCTGCGACATGCCAAATGGTTTCAGgCCAGAGTTAATGGATTAAAATCGTGCGTAATAGTTCTCCGTATTCTCCGTGATTTGTGCAACAGAGTGCCCGCTTGGGAGCCATTAAAAGGATGGCCTCTTGAGCTTATCTGTGAGAAGGCCATAGCCACATGTAACCGGCCTCTCGGAGCTGGGGAAGCTCTTCGTCGGGTGATGGAGTGCTTGGCCTCTGGAATCCTGCTCCCAGgtggACCAGGATTACACGATCCTTGTGAAAAAGAGCCTACAAATACCCTATCCAATATGACAGACAAGCAGGGAGAAGATATCACATACAATGCACAGcatGCATTGCGGCTATTAGCCTTTGGGCAGATCTACAAGGTACTAGAGATGGACCCACTTCCTTTGAGTAAACCATCGCAGAAATATTCCTGGTCAGACAAAGAAgGAACAAGTCTGAAAAGACCCTATGAAGACGGGTCATTGGAAGAcaaagaattaattaaaaagatgaaGCGCAACTTGAGAAAAAttCTGGACAGCAAAGCAATAGATAGCAACCAGCCAATGAACGCTCTCATGAGACTTAACCAAATCCGACCCGGGCTCCAATACAAGCTCCTGTCACAGTCTGGGCCTGTTCACGCACCTGTCTTCACGATGTCTGTAGATGTGGATGGCACAATATATGAAGCCTCAGGGTCATCAAAGAAAACAGCCAAACTCCACGTAGCAGTGAAGGTTTTGCAGGCCATGGGCTACCCAACTGGTTTTGACACAGATCTGGACTCCATGAGTGCGGATGAAAAATCAGATGGCGAGGGGAAGAGCGAGACGGTGTCTACGAACTCGAGCAATAATACAGCAAACTCCACCACAGACAGCTCCAACACACTGGAGGTACGAACTCAGGGTCCTATTCTTACTGCCAGTGGCAAAAACCCGGTCATGGAGCTGAACGAGAAACGGCGAGGGCTGAAGTACGAGCTAATATCAGAAAGCGGGGGCAGCCACGACAAGCGCTTTGTCATGGAGGTGGAGGTGGACGGACAGAAATTCCGAGGGGCAGGACCCAATAAGAAGGTGGCCAAGGCCAGCGCAGCTCTGGCGGCTCTGGAGAAGCTGTTTTCAGGGCCCAATGCAGCCGgcaacaagaagaagaaggtcaTTCCTCAGACTAAAGGGGCAGTGGTGACGGCTGCATCAGTAGCCGCTCAGGCGGTGAGGGGCAGAGGAAGAGCAGCTCTTACCAGAGGGGCGTTTGTCAGTGCTGCTACTGCACCAGGATACGTCACGCCAGGCTACGGGACACCATACGGCTACAGCGCCGCGGCGGCCACGCCTGCCTACGGTTTGCCCAAGAGAATGCTTCTGTTACCAGTCATGAAATTCCCAGCATATCCTGTTCCCCACTACTCATTCTTTTAGCACAATGCCCGAATCAAATTCACTTCGATCCaacataaaactgtaaaaaaaaaatataaaaaaaaaaattgaagggattattttattttcctttttctttttttcctttttcaactCCACATTTTCTTGGGAATATGTACTTGAGCAGCAGATCATTTGTAAAGTGCTTTCATTTTCTAACGACTTTTCACTTTTACAGATAAAACTGCAGGTTAAGTTCTTTAAAACTTGAAGGATGCGTACTGTGAAATGTTACCTCATTCTCAGAGTATAAATTATAccagcctttttattttattttattttattttgtttttgtttgttgttgttattgtaggaaagatttacaaaaaaatgaaacttacACAAACCTCACAATATTCTGTAAAAGTGACTCAATCTGTGAAGGATGTATAGAGAATTATAAACCGCAGATCaccaataaaacatgttctCTTACAACAGCTGAGTACTGCCTggtttataattttatatggATAAAACTAGAATCAAGGAGATTTGAGTGCTTGGacacttaaatatttttttgcattatttatagttCTAATCCCATATAATTGTGACACAATCTTAAA

Function

GO: NA

KEGG:

id description
K13200 STRBP; spermatid perinuclear RNA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76378 lncRNA downstream 21816 10203839 ~ 10205678 (-) True G61052
TU76350 lncRNA downstream 136408 10085913 ~ 10091086 (-) True G61027
TU76310 lncRNA downstream 298628 9927977 ~ 9928866 (-) True G60993
TU76105 lncRNA downstream 924247 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 1066761 9157927 ~ 9160733 (-) True G60833
TU76445 lncRNA upstream 244584 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 434794 10696618 ~ 10698099 (-) True G61136
TU76500 lncRNA upstream 436305 10698129 ~ 10700883 (-) True G61137
TU76576 lncRNA upstream 699312 10961136 ~ 10961434 (-) True G61200
TU76577 lncRNA upstream 700487 10962311 ~ 10962510 (-) True G61201
AMCG00020112 mRNA downstream 284418 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020107 mRNA downstream 336931 9873449 ~ 9890563 (-) True AMCG00020107
AMCG00020106 mRNA downstream 374948 9826766 ~ 9852546 (-) True AMCG00020106
AMCG00020100 mRNA downstream 428336 9792806 ~ 9799158 (-) True AMCG00020100
AMCG00020098 mRNA downstream 444058 9780815 ~ 9783436 (-) True AMCG00020098
AMCG00020123 mRNA upstream 276458 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020125 mRNA upstream 282961 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020124 mRNA upstream 369468 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020132 mRNA upstream 443151 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020133 mRNA upstream 511872 10773696 ~ 10779387 (-) True AMCG00020133
TU75987 other downstream 1387549 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1399385 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 2664902 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 3756060 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 3760908 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 493644 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 1433867 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 2222545 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 2222545 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 2228874 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004876 False 2396 mRNA 0.54 19 NC_007121.7 9837292 ~ 10016348 (-)