RNA id: AMCG00020124


Basic Information

Item Value
RNA id AMCG00020124
length 1770
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00020124
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10631292 ~ 10647839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAAACTGGCAGTCGACCTTCAGCCTGCGTGAAGTGACGGTTATGTACTTCACCATGTTGGCAACACTGGTGGTGATCCTTGTGGCCTCCTACCAGGCAGCCAGCAATCTCGAGGACCCTTTCCCCTACCAGATGCCCCTGGACCCCCGTGGAAACCTGCAGCTCTCGTGGAACATCAGCTACCCTCTGCAGAATCTCTACTTCCGGCTGCTGGTGAAGGATCTTCGCTATGGTATCATGTTCGGAATGTCAGACCGTGGAGAATTCCAGAATGCTGACTTGGCTATTCTATGGAGTGATGGGTACAAGTCCTACTTTGGGgacgcCTGGAGTGATGCTCATGGCCACGTCAGATTGGATAGCCAACAGGACTACCAACTGGTAGAAACACACAGGGCTCCAGAGGGATTTTACATTCTCTTCAAGAGGCCTTTCAGCACCTGTGACTCCAAAGACTATGTCATTGAGGAGGGCACGGTTCACCTCCTCTATGGTACCCTGGACAGACCAGTCACCTCGCTCCAGATGCTCAACCTTTCCCTGACCAACACTGGAGTCCAGCGAGTGCAACTGCTGCGGCCTAATATCCCTGCCCCCTCACTGCCTCCTGATGTCAAGACCCTGGAGGTCCTGTCTCCCAGTGTGACCATTCCAGGCCAAGAGACCACTTACTGGTGCCACATTGTTGAACTGCCAAAGAATATGCCAAAGAACCACATCATTATGTATGAATCTGTGATCACCCCTGGGAACGAAGCCATTGTCCATCACATCGAGGTGTTCGAGTGCGCCCCACAGTTCAACTCCATCCCCGAGTACAGCGGCTCCTGTGACTCCAAGATGAAGCCTAAGACCATCAATTACTGTCGCCACGTGCTGGCTGCTTGGGCAATGGGTGCCAAGGCTTTTTATTATCCTGATGAGGCTGGTCTCTCGTTGGGGGGACCGGGGTCTTCCAGGTTTCTCCGTTTGGAGGTCCACTACCACAACCCCCTGAAGATCAGAGGCCTACTGGACTCATCTGGAATACGGCTGTATTACACTCCCACACTGAGGAAATACGACGCTGGAATAATGGAGCTGGGCCTCGTTTACACCCCAGTGATGGCGATCCCACCCCACGAGGAGCACTTTGAACTGACTGGGTATTGCACTGCCAAATGTACACGGACTGCCCTACCATGGGGAGGGATCAACATTTTCGCCTCCCAGCTGCACACACACCTGACAGGCCGCAGTGTGCAGACAGTACTGGTCAGGGAGGGCAAGGAGGTGGTGATAGTCCAGGAGGACAGCCATTTCAGCACCCACTACCAGattatcCGGATGCTAAAAAAGATGGTGAATGTGTTACCTGGTGGCTTCAGCATTGAAGATGAGATGTGTGTGAATTATGTCCACTATTTCCCTCGCACTCAGCTGGAGTTGTGTAAGAGTCATGTGGATGAAGATTACCTACAGAAGTACTTTGCCTTCATTAACAGGTTTCAAAATAAGGAGGCTTGCAACTGCAACCAGGCCACAGTAACGGAGCAATTTGCGAACATCCACTGGGACACCTTCAGCAAAGAGGTCCTGAGGTCACTGTACAGCACGGCACCCATCTCGATGCATTGCAACCAGTCTTCTGCTATAATGTTCCCGGGGGAGTGGGAGAGACAAGCCATACCCAGGGTCACAGCCACTCTCCCCAAACCTCACTACCTCTGTGAGACAGggagccagagcccagagcAGCTCAGTACAGCCATTGAGGTTCAGACCTGA

Function

GO:

id name namespace
GO:0006584 catecholamine metabolic process biological_process
GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen molecular_function

KEGG:

id description
K00503 DBH; dopamine beta-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76445 lncRNA downstream 123655 10506408 ~ 10507637 (-) True G61098
TU76378 lncRNA downstream 425614 10203839 ~ 10205678 (-) True G61052
TU76350 lncRNA downstream 540206 10085913 ~ 10091086 (-) True G61027
TU76310 lncRNA downstream 702426 9927977 ~ 9928866 (-) True G60993
TU76105 lncRNA downstream 1328045 9269560 ~ 9303247 (-) True G60839
TU76499 lncRNA upstream 48779 10696618 ~ 10698099 (-) True G61136
TU76500 lncRNA upstream 50290 10698129 ~ 10700883 (-) True G61137
TU76576 lncRNA upstream 313297 10961136 ~ 10961434 (-) True G61200
TU76577 lncRNA upstream 314472 10962311 ~ 10962510 (-) True G61201
TU76579 lncRNA upstream 319341 10967180 ~ 10969599 (-) True G61203
AMCG00020125 mRNA downstream 80496 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020123 mRNA downstream 90927 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020117 mRNA downstream 369468 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020112 mRNA downstream 688216 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020107 mRNA downstream 740729 9873449 ~ 9890563 (-) True AMCG00020107
AMCG00020132 mRNA upstream 57136 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020133 mRNA upstream 125857 10773696 ~ 10779387 (-) True AMCG00020133
AMCG00020136 mRNA upstream 135525 10783364 ~ 10816925 (-) True AMCG00020136
AMCG00020135 mRNA upstream 286936 10934775 ~ 10943764 (-) True AMCG00020135
AMCG00020140 mRNA upstream 450635 11098474 ~ 11109758 (-) True AMCG00020140
TU75987 other downstream 1791347 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1803183 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 3068700 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4159858 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 4164706 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 107629 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 1047852 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1836530 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1836530 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1842859 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile