RNA id: AMCG00020132


Basic Information

Item Value
RNA id AMCG00020132
length 2799
RNA type mRNA
GC content 0.56
exon number 18
gene id AMCG00020132
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10704975 ~ 10727531 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACAACTCTGGTCCTGCTGGGAGCTctgactctcactctctccctgggAAACTTCTCAGCCATTGGGGGGCAGGAGGAGGGCCAGGCCTCCAACAGCCTGGAGGACGACTCCGAGGTGACGGCCTACTGGTGGGGAGAGTGGGCCAAGTGGACAGCCTGCACGCGCACGTGTGGGGGAGGGGTGAAGTTCCAGGAGAGACACTGTCTTAAGCAGAGGAAGAAAACTGCTGTTGGAAAGGAAAACATGACTTGCACTGGCACATCAAAGAGATACCACCTCTGCAACATCAAGGACTGCCCCACTGCTGGACGCAGCTTCAGAGAAGAACAGTGTTCATCTTTCAACTCTCAGGTCTACAATGGCAGAAGCTATCGCTGGAAACCCCTGTACCCTGATGATTACGTGCACATCTCTAGTAACCCCTGTGACCTGCACTGCACCACGGTGGATGGCCAGAGGCAGCTGATGGTGCCGGCTCGCGATGGGACATCCTGCAAGTACAGCGACTACAGAGGGGTCTGCGTCAACGGCAGGTGTGAGCCAATTGGGTGTGACGGGGTGCTGTTTTCTCCTCACACCCTGGATAAGTGTGGAGTGTGTCAGGGCAATGGCAGCAGCTGTATCAGGGTCACTGGAAACTTCCGGAGAGGGACTTCCAATCTGGGTTACTCCTTCATAACTCAGATCCCAGAGGGCTCCTGGGACATCCAGATCATAGAGAGGAAAAAGTCTGCTGATATTTTGGCAGTCACAGACCAAGCTGGCAACTTCTTCTTTAATGGTGACTACAAGGTGGACAGCCCACAGAACTTCCACGCTGCTGGGACCATTTTCAAGTACCGAAGACCAATGGACGTTTACGAGACTGGGATCGAGTACATAGTTGCAAAGGGCCCTATCGATCAGGCTGTCAATGTTCTGGTGTGGAACCAGAATGGCAGGACGCCCTACATTACCTATGAGTACACAGTGCTGCGGGATCCCCATTCTCCAGGCCCACAGCCTCTCCTCTATCCTGGGACAGACACCTGGGGCCCAGGAGGCAAGAGCAGGGGCCATGTTTCTATGGAGACTGATGGCTTGGTCCCACACAATGGCAGCACATATGCTAAAGGGGCaaaggagaagggagagagtgGAAACCAGGTGCTGGAGAAGGAGTCTGACACAGGGACTGCCATTGGGAGCAAGGGACAGGAAACCAATGAGGTGTACGAGGAGACGGCCACCATCGACTGCGAGCAAGGGGCCCAGATGAAACCACATTACACAGCTCTGAACACCAGCAGACCCAACAGCCTGGGAGACCACATCTTCCAAGCCTCCAAATCCACGTCGGAAGAGCTGGTGCCCGACTCAGAGAACCTCATCTGGAATGTTCTGCTGGGTGACCCTCTGGGCTCCGAAGAACTGGTGGTCAACATGACGACGAACCGGCTCTTCGCAAAGGGGGAAGCTATGTACTCATCAGAGGCTGGCCGAATGGACCTGGACTATGACAGTCTCGAGCATGCGTCTCTGGACACCTTCAATGGGACATTGCAGGAGCTGAGCATGGGAAGACGCAGCAACGATACCGGAGGCCTGCTGTTCTCCAATAGGTCAACCCTGCCTGGCCAAACCATGGGCAACCGGACTCACAAGAACAGGAATCACCAAAGGTTCCTGCAGAAGAACATCAGGCTGAGTGCAGCTGACATGTACAGGTGGAAACTGTCTTCCCAGGAGCCCTGCAGCTTGACCTGTTCAATAGGTGTGGCTAAGTCCTATGCCATGTGTGTGCGGTATGATGGGGCTGAGGTAGATGACATGTACTGCGATGCCCTCACACGCCCGGAGCCGGTCCATGATTTCTGTATTGGGAGGGAGTGCCAGCCCAGGTGGGAGGCGAGCAGCTGGAGCGAATGTTCCAGAACGTGTGGGGAAGGGTTTCAGTTCCGCTTGGTGCGATGCTGGAAGATGCTGTCCCCTGGCCTGGATAGTTCAGTGTACAGTGACCTCTGCAACCTGGCGGAGCTGGAGAGACCTCCCGAGCGCCGACCCTGCAAAAGTCCAACTTGCGGGCCCCAGTGGGAGGTGGCAGAGTGGGCAGAGTGTCCTGCAAAGTGTGGCAAGAAAGACATCGTGACAAGGGAAGTGAGGTGCTCAGACGAGAAAAAGCCATGTGAAGCGACGAGCCGTCCACCATCTGCGAAGAATTGCACAGGACCGCCGTGTGAGAGACAATGGACAGTGTCGGAGTGGGGACCGTGCTCAGGTGCTTGTGGCCAGGGCAAGATGATCCGGCACGTGTATTGCAAGACGCCAGATGGCAGAGTGGTGCCCGAGTCCCAGTGCACTCTGGAGAGCAAGCCACTGGCAATCCACCCCTGCGGTGAGAAGGACTGCATGGCACACTGGCTGGCACAGGACTGGGAGAAGTGCAACACAACGTGTGGCCGTGGAGTGAAGAAGCGGATAGTGCTGTGTGTTGGCATCGACAACGGAAAATTCAAAATCCATGAGGAGGATGACTGTGACGCCAGCAAAAAGCCAGACGAGGAGAGCACGTGCTTCGAAAGGCCTTGCTTCAAGTGGTACACCACCCCCTGGTCTGAGTGCACCAAGACGTGCGGTGTAGGCGTGCGCATGCGAGATGTGAAGTGCTATCAGGGCAGGGAGATTGTCCGTGGCTACGAGAACTGCCAGGACAGGCCCACTACCAACTGCTCCCTGGCCCTGAAAGTCAACCTGTGCAGTCACTGGTACTACAGCAAGGCCTGCTGCCACTCCTGCAGATCTAACCGCTCCTAA

Function

GO: NA

KEGG:

id description
K24430 ADAMTSL2; ADAMTS-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76500 lncRNA downstream 4092 10698129 ~ 10700883 (-) True G61137
TU76499 lncRNA downstream 6876 10696618 ~ 10698099 (-) True G61136
TU76445 lncRNA downstream 197338 10506408 ~ 10507637 (-) True G61098
TU76378 lncRNA downstream 499297 10203839 ~ 10205678 (-) True G61052
TU76350 lncRNA downstream 613889 10085913 ~ 10091086 (-) True G61027
TU76576 lncRNA upstream 233605 10961136 ~ 10961434 (-) True G61200
TU76577 lncRNA upstream 234780 10962311 ~ 10962510 (-) True G61201
TU76579 lncRNA upstream 239649 10967180 ~ 10969599 (-) True G61203
TU76582 lncRNA upstream 265368 10992899 ~ 10993246 (-) True G61206
TU76670 lncRNA upstream 985970 11713501 ~ 11723414 (-) True G61273
AMCG00020124 mRNA downstream 57136 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020125 mRNA downstream 154179 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020123 mRNA downstream 164610 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020117 mRNA downstream 443151 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020112 mRNA downstream 761899 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020133 mRNA upstream 46165 10773696 ~ 10779387 (-) True AMCG00020133
AMCG00020136 mRNA upstream 55833 10783364 ~ 10816925 (-) True AMCG00020136
AMCG00020135 mRNA upstream 207244 10934775 ~ 10943764 (-) True AMCG00020135
AMCG00020140 mRNA upstream 370943 11098474 ~ 11109758 (-) True AMCG00020140
AMCG00020141 mRNA upstream 417164 11144695 ~ 11162222 (-) True AMCG00020141
TU75987 other downstream 1865030 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1876866 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 3142383 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4233541 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 4238389 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 27937 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 968160 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1756838 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1756838 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1763167 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile