RNA id: AMCG00020133


Basic Information

Item Value
RNA id AMCG00020133
length 1638
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00020133
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10773696 ~ 10779387 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACACCCCTCCATCTGCGGAAGAAACCCCCGACGACTCCCACGATCACGGGCAGGCCAGGGCGGAGACGTTGTTCCCCACGGCCGTGTCGGAGGAGCAGCTGAGCAGGGCTCGGGAGAGGTCGGTCATCTTCGGATCCTGCGGCATCTTTGAGCCGGAGGAGGGGCGCAGGGAGCTGCCAGAGCTGCGCGGCGGCTCCATCATCCAGCGCCAAGCCGCCCAGCACTATGAGAAGGGCTTGGAGGCCATGTCCCAGGCACAGTGGGGCCGGGCCGTCACCTGCTTCACCAAAGCCATCAATCTGCAGCCAGACCAGACACGGCTGTTTGTGTGCAGGGCTGAGGCCTTCCTGCAGCTTTGCGATTTCCAGTCTGCTGCCCTCAATTACAGGAAGGCCTGCTCTCTGGAACCACAGTCTGCGGCCTTCAGCACCCGTCTGGTCTTCATCTTCTACCTGCAGGGCCAGTGCCTGTTTGACCAGGGACTCTATCTGGATGCCCTGGAGTCTTTCGCCAAGGCTTCTGAGCTGTTCCCAAATAATAGGTCCTACCACATGAGGAGGTTGGTGACACTCGATGCAAACACATCCTGGATAAAGCGATCTACGTCACCTCTTAATTTACTCATGCTCTACTGTCTGCGTCTGATTAACGGCTGGCTGGAGACGGACACCCAAAACCCTGACTTATTCATCCTGAGGGCCAGACTACATAAACACTTCAACCAGGTCAGTGTTGGCCAAAATCCAGCCCAACCCAAAGGTTGGCCAGATGCTTTTCTGagttgtgtctctgtctgttctGGTCTTTTTGCGGCATCACAGATGACGCTATGTTACCATGATGTGAAGGCGGCCCTGGCGCTCTCTCCGGGCTCTCGGGAGGCTCAGTGCCTGCTGGCGGAGCTGCAGGAGGGGGCAGATCAGGCCCAGATGCAGGCAGTAAGACAGGCAGTGGCAGGGGAGCTCCAGAAAGCTCTGCAGAAGATCAACACAGCCCTAGAGCACAACCCCGAGCACAGCCAATATTTCCTCTTCAGGGGCACTCTGTGTAGGAGGTTGAAGGACTTCAATGGCGCCATTGACGACTTGATCCAGGCGCTGGGGCAGGGTGGTGGAGCGGGGACGGAGGGGGGTGCAGAGGCACGCAGACAGCTGGTACTGACCTACAACGACTTTGCGGTGCACTGCTTCTCCCGCGGCTTCTACCAGGAGGCCGTCACGCTGCTCAACAAAGCCATCAAGGATGAGAAACAGGAGAAGGGTCTCTATATCAACAGAGGAGATTGTTTCTTCAAGCTCGGGGAGATGGAGTTTGCCGTGGCGGACTACCAGCAGGCTGAAGAGTTGGACCCAGAGGACTGGACTATCTGGACTCGGCTTGCTGTGGTCCACAACACACTGGGCCTCTGTGATCACGAAGCAAGGCAAGCATTCTCCCTGAACTCTGCGAAATACCAGGAGGCAGCCGACAAATTCTCTGTTGCGATCAAGTACAATCCCTGTGTCTCTCAGTACTACGAGAACCGGGGGAAGACGCGGCTGAAAATGTCAGACGAACGGGGCGCGAGGGAGGACGCCATAATATCTCATCTTCTGGACCCCAGCGACGAGCAGGCAAGTCTACTGCACAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76500 lncRNA downstream 72813 10698129 ~ 10700883 (-) True G61137
TU76499 lncRNA downstream 75597 10696618 ~ 10698099 (-) True G61136
TU76445 lncRNA downstream 266059 10506408 ~ 10507637 (-) True G61098
TU76378 lncRNA downstream 568018 10203839 ~ 10205678 (-) True G61052
TU76350 lncRNA downstream 682610 10085913 ~ 10091086 (-) True G61027
TU76576 lncRNA upstream 181749 10961136 ~ 10961434 (-) True G61200
TU76577 lncRNA upstream 182924 10962311 ~ 10962510 (-) True G61201
TU76579 lncRNA upstream 187793 10967180 ~ 10969599 (-) True G61203
TU76582 lncRNA upstream 213512 10992899 ~ 10993246 (-) True G61206
TU76670 lncRNA upstream 934114 11713501 ~ 11723414 (-) True G61273
AMCG00020132 mRNA downstream 46165 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020124 mRNA downstream 125857 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020125 mRNA downstream 222900 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020123 mRNA downstream 233331 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020117 mRNA downstream 511872 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020136 mRNA upstream 3977 10783364 ~ 10816925 (-) True AMCG00020136
AMCG00020135 mRNA upstream 155388 10934775 ~ 10943764 (-) True AMCG00020135
AMCG00020140 mRNA upstream 319087 11098474 ~ 11109758 (-) True AMCG00020140
AMCG00020141 mRNA upstream 365308 11144695 ~ 11162222 (-) True AMCG00020141
AMCG00020139 mRNA upstream 401999 11181386 ~ 11187648 (-) True AMCG00020139
TU76536 other downstream 17277 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 1933751 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1945587 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 3211104 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4302262 6468288 ~ 6471434 (-) True AMCG00020019
TU76663 other upstream 916304 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1704982 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1704982 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1711311 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 1711311 12490698 ~ 12496740 (-) False AMCG00020180

Expression Profile