RNA id: AMCG00020136


Basic Information

Item Value
RNA id AMCG00020136
length 7071
RNA type mRNA
GC content 0.56
exon number 28
gene id AMCG00020136
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10783364 ~ 10816925 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCTCCGAGGCCTAATCCTAGCCTGTTTGGCTGCAGCTGCTCTGCTTAAGTTTGCTGATGCAGGGCTGATTAAGAAGGTGATCCGGCACAGAAGAGAGACCTTGATTCCAGCTGCTGTCGAGAACGTCACCCTGCCAAGCCCAGACCAACCCGTTGTGTTCAACCATGTCTACAACATCAACGTGCCTATGGGGTCCATGTGCTCGGTGGATCTCGACGCCCCCGACGGCATGGGGGTCAAGCCCAAAACCCCTTCGGACGCCCATGACACAGAGCACACTATGGATGGAGACAACCAGATAGTCTTCACCCATCGCATCAACATCCCTCGACAGGCCTGTGGCTGTAACAATGCTGAAGACCTGAAAGACCTCCTCAACCGGCTGGAGCTCCTTGAGGGACAGGTGTCCGCCCTGCGAGAGCAGTGTGGTAGTGGATCCGGCTGCTGTGGTGCCAATGTTATAGGGGTTGTGGAGGTTAAGCCATACTGCAACGGTCACGGCAACTACAGCACGGAGacctgcagctgtgtgtgtgagccgGGCTGGAAGGGCCCCAACTGCACTGAGCCTGAGTGCCCGAATGACTGCCAAGACCAGGGTCGCTGTGTGGATGGAGTGTGCGTCTGCTTCGAGGGCTTCACGGGCGAGGACTGCGGGGTGGAGATGTGCCCGGTGGACTGCGGGGAAAATGGACAGTGCATTGATGGCATGTGCATCTGTGCGGAGGGCTTCACTGGGGAGGACTGCTCCCAGACACGCTGCCTCAACAACTGCCTGGGCCGCGGGCGCTGCGTGGACGACGAGTGCGTGTGCGATGAGGGCTATACGGGATTCGACTGCTCGGAGCTCATCTGCCCCAACGACTGCTATGACAGGGGCCGTTGCATCAACGGCACCTGCTACTGTGACGAGGGCTTCTCCGGGGAGGACTGCGGCGAGCTCACCTGCCCTGGCAACTGCAACAACCGTGGGCTCTGCGTGGACGGGCAGTGCGTGTGCAGCGCAGGTTACACCGGCGAAGACTGCAGCGAGCTCACCTGCCCCAACGACTGCAACGAGCGCGGCCAGTGCGTCAACGGGATGTGCGTCTGTGACCCCGGCTTCGTGGGCGAGGACTGCGGCGAGCTGGCCTGCCCAAACAACTGCCACAACCGTGGCCGCTGCGTCAATGGCCAGTGCGTCTGCGACCAGGGCTTCATGGGTGAGGACTGCTCCGAGCTCTCCTGCCCCAACAACTGCCAGAACCGAGGGCGGTGCGTCAACGGGCAGTGCGTGTGTGATGAGGGCTTCGCCGGGGAAGACTGCAGTCTGAAGACGTGTCCGAACGACTGCTTCGGCAGGGGCGACTGCGTGGATGGCAAATGCGTGTGCTTCGCTGGCTTCACGGGAGAGGACTGcagtgtgctcacctgctccAACGACTGCCAGGGCCGTGGACGCTGCATGGACGGCCAGTGCGTCTGTGATGAGGGCTTCACCGGCGAAGACTGCAGTGAGAAGGCCTGCCCCGACAACTGCAACAGCAGGGGATACTGTGTGGACGGGAAGTGTGTCTGCTTGGAGGGCTATGCTGGAGACGACTGCTCCGAGCTCACCTGCCCTTCAAACTGCAACAACAGGGGGCGCTGCATCAACGGAGTATGCATCTGTGACGAGGGCTTCGTCGGCGAAAACTGCGCACAGCTGGGTTGCCCCGACAACTGCAATGACAGGGGCCGCTGTGTTGATGGTTTGTGCGTCTGTGATGGGGGCTTCATAGGAGAAGACTGCTCAGGAGTGGCCCCACCAAAGGATCTGATGGTGACAGAGGTTACTACTGAGGCGGTGAACTTGACCTGGGTCAACGAGATGCTGGTAACTGAGTACTTAATCACCTACGTGCCCACGGCACCTGGGGGCCTGGAGCTGGACTTCCGAGTGCCAGGGGACAAGCGCGCCGCCACTGTCAGAGAGCTTGAACCTGGTGTAGAGTACCTGGTCAACGTCTACGCCATCCTCAACAACAAAAAGAGCGTGCCCGTCAGTGCCCGCGTTGCCACACACCTCCCAGAGCCTGAGGGATTGAGGTTTAAGTCCGTGCGAGAGACATCTGTGGAGGTGCAGTGGGATCCCCTGGACATTGCTTTCGACGGCTGGAACCTCATCTTCAGAAACACTaaagaagaaaatggaggCATTGTCAACACTCTTCGAAGGCCTGAGACCACCTACGAGCAGTCAGGGCTGGGGCCTGGCCAGGAATACGAGGTCACACTTCAGGTTGTCAAGAACAAAACCCATGGCCCCGCTGTCACCAAGAATGTCATCACAAGGATCGACGCCCCGAGCCAGGTCGAGGTGCGTGATGTGACGGACTCCACAGCCTTCATCACTTGGTTCAAACCCGTGGCCCAAGTGGACAGTGTGAGTCTGTCCTATGGCCCCGTCTCGCAGCCCACTGACAGGACCGTTGTGGAGCTCTCTCCGTCCGACTCCCAGTACAACGTGGGTAACCTGAAGCCCGACACGGACTACGAAGTGTCACTGGTGTCCCGGCGTGGCAAGATGATTAGCGAGCCAGTCTCTGAGACCTTCACCACCGATCTGGATGCTCCCAAGAACCTGCAGACTCTGTCGCAGACCGAAAATAGCATCACTCTGGAGTGGAAGAACAGCCAGGCTGACGTGACAAGCTACCGGATCAAATATGCCCCTATCTCCGGGGGTGAACATGCAGAGATCACCGTGCCAAGAGGCCGGCAAGCTACCACCAAAACCACGGTCACTGGTCTGAGGCCAGGCACTGAGTACGGAATGGGGGTTACTGCCATGAAGGACGACAAAGAGAGCATGCCAGCCACCATCAATGCAGCCACTGACCTGGATGCTCCCAGCGACCTGAAGGTAAGCGGGGCGACGGAGAGGACCCTTTCCCTGCACTGGAGGAGGCCCCTGGCCAAGATTGACATCTACCGCCTCGTCTACACGTCCGCAGATGGGAAGAGGCAGGAGGTGGaggtccctgctgatgagaccTCTAACACGCTCAGTGGCCTGGATCCCGGCATGCAGTACACCATCACCCTGGTTGCAGAGAGGGGTCGGCAAAAGAGCAAACCCGCCACCATCACTGCTTCAACGGCTTCATTCACATTCTATTTAGCTGACTATATCCCTGAACTCACAACTCCAAAAGTGTCAGAGGAAAATCTTATTAGCTTTATGTCTCTAGACGCCACAGATCCCCAAATCTCAGGGATGGGGCGAGAGGATGATATTGGGGCCCTGACAGTTGTGGGCGCTACATCAGATGGATTTCATCTCTCTTGGAATATGGAGGCATTTGATAGTTACACTGTAGAATGTAGAGACACAATGGGATTATGGGATAAAATGGAGACCCATCTCCCTGGAGATGCAACAGGCACTAGAATCCGTGGCTTGAGGGCGGCCACAGCATATCAAATAAGGCTTTATGGAATAATCAATAACCAAAGATCAACGCCACTTGAAGCAGTTGCTGTTACAGCCTCTGTGGATGTAGTCTCCTTGAATGTCAAAAGTGCTCCAACGTTAGCTTCCAACATGCAGCACCATCCAACAGTTGCTCCACACATGTCCCTAAAAACAGAAGTGCCATCTACGGTGGCTGTGTCACAGCCCCCTGGCACAGAGCCTGTGAGCTCAAGCCTGGAGCCCCTTGGAGATCTCAACGTCACAAAGGTTACCCAGAATAGCCTGGGCCTGGCCTGGGCCATTCCTGGTGGACCATATGATAGTTTTTTGGTAGAACTGAAAGATTTAAAACAGTCCAACAAGGTTTATGAGGTTACAGTGCCAGGAGATGCCCGACACACTGACCTAGATGGCTTGTCCTCTGGCATACTTTATGAGGTTTCACTGTATGGGATTGCCCAGGGAGAGAGGTCACTGTCTCTCAAGGCTATTGCCAACACAGAAGAGGAGCCCACGCTTGGCATGCTAGTGGTCTCAGATGTTTCTGGGGACAGCTTCAATTTGTCGTGGGGCGCGGCCGACGGGGCCTTTGAAAGCTTTCTCATTGAAGTTACTGATGCTGAGGGCGGGCCTGACTCGCAGAACCACATCGTGTCTGGTGATGTCAGGAACCTGGGCATCACCATGTTGAAGCCCAGCTACTTGTATAAGATCACCCTGCACGGTCTGGTGCGCGGGTCCCGCACTCAGCCTGTCTTTGCAGAAGCCCGAACAGAACCGACAGTTGGCAGTCTGTTTGTGTCTAACATTACCTCAGAAAGCTTCCGAATTTCCTGGAATGGCACGGAAGGGGATTTTGAGGGTTTTGTCCTGGAGATCATAGATTCCAACAGGCTGATGGAGCCCATGGAATTTAACATAACCAGCCATTCACTGTTCGCTGATATCTCAGGGCTGAGCCCCAGCACTGACTATATAGCCTACCTCTATGGGGTTGTCCGGGGTGTCAGAAGTCATGCTGTCAGTACTGTTGCTTCCACAGCTGCAGAACCTGACTTGGGCAAACTAGTTGTTTCTAAAATTACCTCAGAAAGCCTGTCGCTCTCTTGGACGACGAGAGAAAGGGCTTTTGATAACTTTGTTGTTGAGATCAGAGAGTCTGCTTTGCCCTCGCAGGCAATGGGGCGAACTCTGTCCAGTGGGGCGCGCTCCACAGTAATTTCCGGGCTGAAGGGCAGCACACAGTATGACATCAAATTATATGGCAGCTCTGGCAGCCAGAATACACTGCCCTTAACAACCATAGCTACCACAGAGCCAGATCCAAGACTGGGCACTCTAGCTGTGTCAGATATCACCCCAGACTCCTTCACCCTGATTTGGAGCACGGTGGCTGGCACGTTTGACGGCTTTGTCATCCAGGTCAGAGATTCTGACATGCTGTATAACCCCCTGGACCTCACAATGCCTGAAGGTGCCCGAAATGCCAGTATCAAGGGCCTGGCAGATGCCACGGGCTATAACATTACATTGTACGGCCTGTCCCTGGGACGCCGCACGCCCCCTCTCTCGACTTTTGCCATTACAGCGGCATTGCCCAAAGTGGAAAACCTTAATGTTACGGATATTAACCCATATGGGTTCCGGCTGTCCTGGACGGCGAGGGACGGGGGCCAGCACGATGGGTTTGACCACTTTCTCATAGTGGTCACTGACTCAGGGTGGCTGCTGGAACCCCAGGAGTTCACGGTGCCAGGAAGCCAGCGCTCCCTGGACGTGTCCGGGCTGATCACTGGCATAGGCTATGAGATCAACCTGTCTGGCGTGGCCAAGACCGGGCTCCGTTCCAAGTCATTGACAACAGTGGCTGTGACAGAAGCCGAGCCCGAAGTGGACCACCTCCTCGTCTCGGACGTGACCGCTACGAGTTTCCGTCTGTCCTGGACCGCGGAAGATGACGTCTTCGATAGATTCGTTATTAAGATTAGGGATGCCAAAAAAGTGGCTCACCCACAGGAGCTGAGCGCTTCCGGGAGTGAGAGAACCAAAGACATTACGGGTCTCTCAGGGGGCACTGAGTACGAAATCGAGCTGTACGGCGTGGCAATGGGGCGGCGATCGCAACCCATTAACGGTGTAGCCAGAACAGGATTGGGAGCTCCTAAAGGCTTACGTTTCTCTGATGTCACCGACACCACCGCCACTGTACACTGGACCATCCCCCGAGCCAGAGTGGACAGCTACCGGGTCACCTATGTGCCGATACTGGGAGGAACTCCGGTGACAGTGACCGTGGATGGCTCCCGCTCCAAAACAGTCTTGGCCAACCTCATGCCTGGAGTGACCTACGAAGTCAGCATCATCTCAGTGAAGGGTCTGGAGGAGAGTGACCCTGCGTCCGACAGCGTCACTACAGCTCTGGACAAACCCCGTGGCCTGACAGCTGTCAACATCACAGATTCAGAGGCCTTGCTTCTGTGGCAGCCTGCCATCGCCACCGTGGAAGGATACGTGATCACATACAGCGCCGACTCCGTTGCCCCAGTGGTTGAACGAGTGTCCGGGAACACGGTGGAGTTTGATATGAGTTCCCTGCGCCCTGCCACACTCTACACGGTCAGGGTTTACGCTGTGAGAGGCAACCAGCAGAGTGCTGCCACCAccactgaatttaccacagCCGTGGATGCCCCTCGTGACCTGTTGGCCAGCAATGTTCAGACAGAAAGTGCCATGCTGACGTGGAAGGCACCCAAAGCCATCGTCACTGGATACATTCTGAGCTTCGAGTCGGCCGATGGCGAGATCAGGGAAGTTGTTCTGAGTCCCACAGCCACCTCCTACAGCATGTCCCAGCTGAGCCCTTCCACACAGTATACAGTGAGACTGCAGGCCATCGCGGGCCCGGAGAGGAGCCGCCACATCCACACCATCTTCACCACAAttGGTGTGTTGTACAAACATCCTAAAGACTGCTCTCAGGCCCTCCTCAACGGGGACACCACCTCTGGGCTCTACACCATTTACCTGGGCGGAGATGAGAGCCAGCCTGTGCAGGTGTACTGTGATATGACAACTGATGGCGGTGGATGGATTGTGTTTGTCAGACGCCAGAGTGGCAATCTGGAGTTCTTCAGGAACTGGAGGAACTACACAGCTGGGTTTGGAGACCTGAACGATGAGTTCTGGCTTGGCCTGAGCAGCCTTCACAAGATCACATCCTCGGGTCAGTACGAGCTACGTGTGGACATGAGAGACCAGGGCGAGACCGCCTACGCTCAGTATGACAAGTTCAGTGTCTCCGAGCCTCGCAGCCGCTACAAGGTCTACGTTGGAGCCTACAGTGGCACAGCAGgTGACTCCATGACTTATCACCATGGCCGCCCCTTCTCCACCTATGATAACGACAATGACATCGCTGTCACCAACTGCGCTCTGTCCTACAAGGGTGCCTTCTGGTACAAGAACTGCCACCGCGTCAACCTCATGGGCAGATACAACGACAACAGCCACAGCAAGGGTGTCAACTGGTTCCATTGGAAGGGTCACGAGCATTCCATTGAGTTCGCTGAGATGAAAATCAGACCGTCCAACTTCAGAAACCTTGAAGGAAGGAGGAAAAGATCATAA

Function

GO: NA

KEGG:

id description
K06252 TN; tenascin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76500 lncRNA downstream 82481 10698129 ~ 10700883 (-) True G61137
TU76499 lncRNA downstream 85265 10696618 ~ 10698099 (-) True G61136
TU76445 lncRNA downstream 275727 10506408 ~ 10507637 (-) True G61098
TU76378 lncRNA downstream 577686 10203839 ~ 10205678 (-) True G61052
TU76350 lncRNA downstream 692278 10085913 ~ 10091086 (-) True G61027
TU76576 lncRNA upstream 144211 10961136 ~ 10961434 (-) True G61200
TU76577 lncRNA upstream 145386 10962311 ~ 10962510 (-) True G61201
TU76579 lncRNA upstream 150255 10967180 ~ 10969599 (-) True G61203
TU76582 lncRNA upstream 175974 10992899 ~ 10993246 (-) True G61206
TU76670 lncRNA upstream 896576 11713501 ~ 11723414 (-) True G61273
AMCG00020133 mRNA downstream 3977 10773696 ~ 10779387 (-) True AMCG00020133
AMCG00020132 mRNA downstream 55833 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020124 mRNA downstream 135525 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020125 mRNA downstream 232568 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020123 mRNA downstream 242999 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020135 mRNA upstream 117850 10934775 ~ 10943764 (-) True AMCG00020135
AMCG00020140 mRNA upstream 281549 11098474 ~ 11109758 (-) True AMCG00020140
AMCG00020141 mRNA upstream 327770 11144695 ~ 11162222 (-) True AMCG00020141
AMCG00020139 mRNA upstream 364461 11181386 ~ 11187648 (-) True AMCG00020139
AMCG00020151 mRNA upstream 1001800 11818725 ~ 11843715 (-) True AMCG00020151
TU76536 other downstream 26945 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 1943419 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1955255 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 3220772 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4311930 6468288 ~ 6471434 (-) True AMCG00020019
TU76663 other upstream 878766 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1667444 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1667444 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1673773 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 1673773 12490698 ~ 12496740 (-) False AMCG00020180

Expression Profile