RNA id: AMCG00020141


Basic Information

Item Value
RNA id AMCG00020141
length 555
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00020141
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11144695 ~ 11162222 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCATGTAGGTACAACAGCAACCAAAAAAATTGAAGTCTACCTCTCGATGCAGTCTGCGCAGGAGAAGCTGCACCCTATGACCGTGGTGACCATGGCCAACGCCAGAGTGCACGACCTCATCGGCCTCATCTGCTGGCAATACACCGGCGAGGGCCGGGAGCCCAAGCTCAATGAAAATGTCAACGCGTACTGCCTTCACATCGCCGAGGATGACGGTGAGGTTGATACGGACTTTCCGCCTCTCGACTCCAACGAACCCATTCACAAGTTTGGCTTCAGCACCCTGGCACTGGTGGAGAAGTACTCCTCGCCCGGGCTGGCAGCAAAACAGTCCCTCTTTGTGCGAATCAATGCTGCCCATGGCTTCTCCCTGATTCCTGTGGACAGTTTGAAAGTGACCATGAAGGAAATCCTGCAGAAAGCGCTTAAGAAGAGGAAAGGATCACAGAAGGGATCAGAAACTTACAGGAATGGGGGGCCTTGCCCAAGCCTATCCTGGGCTGCAGTGGTGGGGGTGCAATGTTCCAGCAAGAACATTGTACGAGAGCAGTGA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K20410 MAPKAP1, SIN1; target of rapamycin complex 2 subunit MAPKAP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76582 lncRNA downstream 151449 10992899 ~ 10993246 (-) True G61206
TU76579 lncRNA downstream 175096 10967180 ~ 10969599 (-) True G61203
TU76577 lncRNA downstream 182185 10962311 ~ 10962510 (-) True G61201
TU76576 lncRNA downstream 183261 10961136 ~ 10961434 (-) True G61200
TU76500 lncRNA downstream 443812 10698129 ~ 10700883 (-) True G61137
TU76670 lncRNA upstream 551279 11713501 ~ 11723414 (-) True G61273
TU76703 lncRNA upstream 763342 11925564 ~ 11927864 (-) True G61302
TU76759 lncRNA upstream 839478 12001700 ~ 12002091 (-) False AMCG00020159
TU76846 lncRNA upstream 1232063 12394285 ~ 12395028 (-) True G61424
TU76910 lncRNA upstream 1268580 12430802 ~ 12451793 (-) True G61470
AMCG00020140 mRNA downstream 34937 11098474 ~ 11109758 (-) True AMCG00020140
AMCG00020135 mRNA downstream 200931 10934775 ~ 10943764 (-) True AMCG00020135
AMCG00020136 mRNA downstream 327770 10783364 ~ 10816925 (-) True AMCG00020136
AMCG00020133 mRNA downstream 365308 10773696 ~ 10779387 (-) True AMCG00020133
AMCG00020132 mRNA downstream 417164 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020139 mRNA upstream 19164 11181386 ~ 11187648 (-) True AMCG00020139
AMCG00020151 mRNA upstream 656503 11818725 ~ 11843715 (-) True AMCG00020151
AMCG00020155 mRNA upstream 797395 11959617 ~ 11960888 (-) True AMCG00020155
AMCG00020153 mRNA upstream 811401 11973623 ~ 11989110 (-) True AMCG00020153
AMCG00020159 mRNA upstream 839478 12001700 ~ 12052211 (-) True AMCG00020159
TU76536 other downstream 388276 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 2304750 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 2316586 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 3582103 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4673261 6468288 ~ 6471434 (-) True AMCG00020019
TU76663 other upstream 533469 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1322147 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1322147 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1328476 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 1328476 12490698 ~ 12496740 (-) False AMCG00020180

Expression Profile