RNA id: AMCG00020153


Basic Information

Item Value
RNA id AMCG00020153
length 4356
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00020153
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11973623 ~ 11989110 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACTGCCATCCTTGCCGGGCTGCGGCCTCAACTGGTTTTCACCCTGGGTCGCCCCATCGTCGCCCCATCGTACCAGAATCACCATCCTGGAGCAGGGCGATGAGCCAGACGGGCAGCTGTTCAGGATCTGGGACGAGGCGGGGCGAGGCATTATCTATACCATACAGCCGCTGGAGCGGGCAGGACTGGCACGGCAGCGGGTGCAAGCCACCACCCGCTCCCCCGAGGGCCAGGTCAAATACCAGAGCATTTTCATTATATGGCCATCACCAGCTACCCTTACTGAGCCCCTGCTTGGAGCTTGCcaACCGACCTCCCGCTACTCACTGTCAAACACAACTTCCTCCCACCGACTTCCGGCTACCGCAGTTCCTGTACAGAAGAGGAGCTATATAGTTCAGACCAAGAAATGTAAACTTTCCCATGAGCTCATGGAGAAGGTGGCCTTTGAAGGGTGGCTGGAGTCTGTCTCTGCCTCCTTTCTCACCTTGAGTGACCAGCAGAAGAACCAGTCTCTGGACCACCTGATCGGCCTGAGCGGGGCGGCCCAGCTGCGGCACCTCTCCAACAGTCTGGAGACGCTGCTCAAGAGGGATTTCCTCAAGCTGCTGCCCCTGGAGCTCACCTTCTACCTGCTGCGATGGCTGGACCCCAAGACCCTGCTCACCTGCTGCCTGGTGTGCAAGCAGTGGAACAAGACCATCAGCACCTGCACGGAGGTGTGGCAGGGGGCGTGCCGAGACCTGGGCTGGCAGATCGATGACTCCATCCAGGACGCCATGCACTGGAAGAAGGTGTACCTGAAGGCCAAGCTGAGAATGAGACAGCTGAGGGAGCAGGAGGCCTTCGAGACGTCCTCTCTGATTGGCCACAGCGCCAGGGTGTACGCCCTCTACTACAGGGACGGCCTCCTCTGCACAGGTTCTGACGACCTTTCCGCCAAACTGTGGGATGTCTGCACTGGCCAATGTATCTACGGcatccagacacacacatgcgctGCGGTGAAGTTCGACGAGCAGAAGCTGGTGACGGGGTCCTTTGACAACACCATAGCCTGCTGGGAGTGGAGCTCAGGTGCCAAAATTCAGCACTTCCGGGGACACACGGGTGCAGTGTTTAGTATAGACTACAACGATGACCTTGACACTTTAGTAAGTGGTTCGGCGGACTTTACTGTGAAAGTTTGGGCTCTGTCAGCTGGGACCTGTCTCAACACCCTCACGGGGCACACAGAGTGGGTGACCAAGGTCTGGCCGATAGGGAGAGAGATAAACTGCAAATGTTTAAAGACATTGTCGGTGTCGGAGGACCgcagtgtgtgtctgcagcCGCGGCTCCAGTTTGATGGCAGATACATCGTGTGCAGCTCTGACCTCGGCCTGTATCAATGGGACTTTGCCAGCTATGAAATTCTCGGGGTTATCAAAACACAGGACTCTGCTAACCTCTCGCTACTGAGTTTTGGAGAAGTGTTCGCTCTTTTGTTTGACAACCgttatttgtatattatggACCTGAGGACAGAAACGATAACTGGTCGCTGGCCTTTGCCTGCCTACAGGAAGTCCAAGAGGGGCTCCAGCTTCCTGCCTGGAGTGACCGCCTGGCTGAATGGACTGGATGGCAAGAATGACTCCGGCCTGGTGTTTGCCACAAGCATGCCAGACCATAGTATCCATTTGGTTCTCTGGAAAGAGAATGGATAAGAGCTTGAACCCCCTCCTTCCCACCTTCTCCCACTGGACATTATGTAACTGGTGCTGCTTATTTAAATCCGTGGCCATGAAGTCAGACATTGCATGAACCAAAGTTTCGCACCTGAAGAAATcaccctgcccccccctccccccacacacagacacatcgTGCTTTTAGAAAGAATAAAATTAAGACAAGCCATCGAGCATGCACACAGTCCCCgccaacacacccacacacagccaCGTACAAAGAAAGTTAAACACACATATGCGTACTTGTttgcaaaccttttttgtttttaatttttgttttaatttccaagaAACTAACACAGAGCGTATTGTATGATGCCCCCGGTCAGGTCATTTAGCTGTTGGGCTTATTCAGAATGTGAAATGATTGTCTTTAACCATGTTCCATGGATATGtgcttaaacaaataataataattatcaaaaGTAGACCCACTGAGAACGGCAGCGCATTGCACAAATGTGGGGCCGATCTACAGAGTTACCTCACTAAATGTCCCCATTTCTTCTGCTTCCTTAGAAGGTCAGTATATTCCTGCTTCAAGTCAGCGATGATGGCTAGTTATTTAATAGCTATACAATATCTACATGTTTTGAAAGTACTGTACCATTTCAAGTATAGTCTAAAGTCTTCCCACAGTACACCAGCTTATTACAGTATCATGTTCATTGGCCAATAAggacacatttatattttgtccaTGCCCACATTTAATTGGACActgatgtttgtgtgtatgctataagtatgtatatacatatgtacataagTAAAGGGATCATTCTGTAGGTCAcccaattattttttctttagtccTTTATTAACCCATGAACCTAGAATAACGAATCTGGTGCCTTGTTAGTATATCTGGTGCAATAGGACTCTTGCTGGTGTTCAGgaaatatcttaaaatgtcCAAAATCATATTCTTATAGAATTGAATTATTGATAATATGCTGTATTTCCTATGGCATATATATGACTGTACTCTAGAGGACACTACAgttttagaaatcaaaatggTGTAACTTTGTCAAGGAAGAATAAGGCAGTACATTATGTAAACTTTTATacttccatatttatttatttattttatgttacaaCCTCTCTTCAGTTGTAATATTGCAGTATTAgccaactatatatatatattttgttttaaagaaaatgactTTCTTCAGAACCTCATTCGTTAAGCTTCAACTGTAactgtagtgtttttttattctgtaataatttaatgaaagtTCAAAATTGGTAAATTTGTAgtgctggtttcacagacccagattagtcCTTTGGCTAATCAGTGGTATTTTAGGTGGAGTAGTCCAAGACTACAGCTAAGTGAGGATCTGTGTAACCAGCAGGAAAGGGGTCCAAACTCGGGCCCCAGTTGGCCACAGACCAGCCAGATTTTTAATATAACCTGTAAgtcaaaaatatttgtaatatcaaCACCTTGTTATAGCCCTGGGTTAACAATTAACCTCATCTTATCTGTCCTTTGTAAGTGAAAAACTCAGTAGGTGATGACAGTTGTTTTTTGCCAGAGGTGTCTTGTTTCTACCTGTTGGCAATCTGCCCTCAAAAACTTGGTTTGTATTTTGCCCTGGATCTGTAGGTTctgatgttttgatttgatacAGACCTCAGACAGATCCAATAACACCggtaaaagttttaaaatttagatttttaatttaaactaattcTGGAAATCCAGGTAAAACAGCAGCCTGTAAGTGTGGTACAACCAGGACCTGGAGTTAAGACTCCTTCTGACCTTTTAGGTCTAATTAAAACCGATTCTGCTTGGATGTTAAATAACCACGGGTTAAAGCTTTGTGAATGAGGTTAGGATGAACTGGTCCTGAGGTAAATTACTTTGAGGATTGACATTCTTTGGCTATTCTGTGTCATTTTTAAGGTTCCTGAGGTTGATatcattaaaatgaacatttgtacATGTCAGACAGATTGTTCATCTCCCATGTTTTGGGAGAGGATCATACAAACACCCATTATTTtgatgcttattattattactataataatcataattgttTTAAGTGGTTTTATAAAAGACTGAATGGGTGACAAAATTACAATAGATACTCActtgaacaaagaaaaactaaaacacactgATGCTTTTTTGGTACTGATCATTGTGACTCCATTATATTAATGACATAGTCATGTCCTTACAGTAGTAATTATGTTCTGCCATTTAGATTAGAGATCAAATACAACTATTGGGAGAGATTGTATAGACAAAACGCTATCGTAGTTCTAAACACTAGTGATTTTCAaaggcaaaacaacaacattccaGCTGTTTATCCtcttaaaaaaatcacaaactattattattcagtATCAACATGTTTTGAGAATGAGGAGCGATTATTGATTATTTCTGAGAGATAACATTACCCACCAATACACACACTAAGCACTTTGTCTCGTCTAATTCCCCCAAAATGTATTGACACACTTGCTGGCTGTACTCTCACCGAATTCTGTGAAATGAAAGTGCATTTTTCTGCTGACTCGCTTTTCGCATtgtaaaactttaaatgttttctgaatgtctttatttttacacta

Function

GO: NA

KEGG:

id description
K10261 FBXW2, MD6; F-box and WD-40 domain protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76703 lncRNA downstream 45759 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 250209 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 980377 10992899 ~ 10993246 (-) True G61206
TU76579 lncRNA downstream 1004024 10967180 ~ 10969599 (-) True G61203
TU76577 lncRNA downstream 1011113 10962311 ~ 10962510 (-) True G61201
TU76759 lncRNA upstream 12590 12001700 ~ 12002091 (-) False AMCG00020159
TU76846 lncRNA upstream 405175 12394285 ~ 12395028 (-) True G61424
TU76910 lncRNA upstream 441692 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 504691 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 589561 12578671 ~ 12583748 (-) True G61488
AMCG00020155 mRNA downstream 12735 11959617 ~ 11960888 (-) True AMCG00020155
AMCG00020151 mRNA downstream 129908 11818725 ~ 11843715 (-) True AMCG00020151
AMCG00020139 mRNA downstream 785975 11181386 ~ 11187648 (-) True AMCG00020139
AMCG00020141 mRNA downstream 811401 11144695 ~ 11162222 (-) True AMCG00020141
AMCG00020140 mRNA downstream 863865 11098474 ~ 11109758 (-) True AMCG00020140
AMCG00020159 mRNA upstream 12590 12001700 ~ 12052211 (-) True AMCG00020159
AMCG00020162 mRNA upstream 63104 12052214 ~ 12069743 (-) True AMCG00020162
AMCG00020158 mRNA upstream 81536 12070646 ~ 12085537 (-) True AMCG00020158
AMCG00020161 mRNA upstream 139498 12128608 ~ 12156720 (-) True AMCG00020161
AMCG00020160 mRNA upstream 185578 12174688 ~ 12184458 (-) True AMCG00020160
TU76663 other downstream 271978 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1217204 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3133678 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3145514 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4411031 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 495259 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 495259 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 501588 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 501588 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 501588 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile