RNA id: AMCG00020158


Basic Information

Item Value
RNA id AMCG00020158
length 6111
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00020158
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12070646 ~ 12085537 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGCTCAGATTCAGACGGAGAAGGCGCATTGCTGTGTGAGCCGCAGGGTCTCCCGCAGTATCGTgtATAAGGGCTTCATTAAGGACTGTCCCAGTGGGCAGCTCGATGCTGCCGGCTTTCAGAAGATCTACAAGCAGTTTTTCCCTTTTGGAGACCCCACCAAGTTTGCCACTTTCGTCTTCAACGTCTTCGACGAGAACAAGgacGGACGCATCGAGTTCTCGGAGTTCATCCAGGCGCTGTCAGTCACCTCGCGGGGGACGCTGGACGAGAAGCTCAGATGGGCTTTTAAACTGTATGACCTCGATAACGATGGCTACATCACCCGCGATGAGATGCTGAACATCGTGGATGCCATTTATCAGATGGTGggGAACACTGTTGAGCTGCCAGAGGAGGAGAACACGCCAGAGAAGAGAGTGGACCGCATTTTCGCCATGATGGACAAGAATGCAGATGGGAAGCTGACCCTGCAGGAGTTCCAGGAGGGCTCCAAGGCGGACCCGTCCATTGTGCAGGCACTGTCTCTGTACGACGGGCTCATACCCCAGAGTGACCCACTCCTGTGCCATCTCACTCGTTCTTGGAAGAAGCCATCgtctttctccccctcttcaCCGCAACAGAAGGGGAATGGTGCGAGCTGTCTTGGGCCGACCTTCGCTGTCAATCACTTGTCTCCATCGTCgccaaatacaaacaaactaacaaagaaacacacacaagggACAACGACTCGTCTTGCCGGCTCAGAGGAAGATAATGATTTTGCAGGAGGATAGAAGAAAGAAACCTGACAGACGGAGAGAGACTTGATCTTCTTTGACTTTTGGAAATGACACATTTTGCTAATTGCTTAAAACAGGACACTGCAGGTGGTGTTGTGTGCATGGGACTGTGTTCAGCCCTGACGTTACAACGCCACTCTTAAATCTGGAGATGCTAGCCGGCGTTGATTGTCCTTGGGTTGCAAAATAtcttatacatgtatatatatataatttatatatataatataatatatatgtatattggcttataaaatatgaaattttaGTGGCAGAATAAGAAAAACGCTGCATCGCTGAGGTTTCGTGAAAAGTGTTGTGCATTCATGTAGaatgaaattgttattttttaattattttaattattttttcattgaaaGCAACATCACTAGGCTGAAACTTGCAACCAacaaagaaatagaaatgtaacaCAGGATGAATCTCTCCCCTCTGTAGGGTGTAGGATAGTGTGCAATACTGATAGCGTCTCCCCCGTGCCCTTGCGTACTCCAAACCGAACCAAACGTGACGCAGATGGCACTGGAGCTTGACTGCGCTCTGAAGTTCCAAAATTGCAGAAGCaacttgttttccatttcatttgtttatttttttttaacaactgtttactaagagaaaaaaatatcactttattctttttgttttaaataagacAAACACTCATCTACGAGTCTGAAGCGGAAAAGGAAAAACGAAGCCGTCCGAGTGCCTGCTTTGAGGAGTCCTAATGTGTGCAAAGCCTCCTTCTACAACTCCATGAGAAACCTGGGCTAAAACTCCCCTTGTTTCACAAGCTGCTTTGAATAAAGAGATCTCGGCGGCAGAAAACTGAATTTTCTTCAGCAGCGGAAAGCTCTGAGCTGCACTAACAATGTATTTCGCACAAAGCTGAGTTTGACAGGGGGCCTTTGGTCCTTCTTTTCAAACGGGGATAGCTGGTTGTAGGCAGCTGATTGAATTTTACAAGTTGCAGATTTCTTTGAACACTGACTGGCTTAACACCTTTACGCCTATAGACCTTTGGAAGATCGTTGCTATGCTTTAACATGGTATTCCTCGTGATATAAACAAATGCGAACTTGGCAGGTCATGTGTGACAGTGATAATGAACATTCAGAACACAGAATTTCTAAACCTAATCTGTTTAGCTCATCCCTATATCACTACCTGGTAGCTCATGTGGTCTTTTACAATGGATTCTCATATGTTTACttaatacatatgtgtgtgtcatGGGTGCTGTCATATCTGGTTAAACGTTCATGCCGTTGTGTCACCAGTTTTCACGGCCTGCATGCAATGGGTCACTCCCACGTTTGACTTTCAGTTGACTCAATGCAATTACTAGCAGATTGCAGCAGATTGCTTTCTTCAGTGAATGGTATCCACTTACAAAGCAAAGACGGGAAAAGCAGGACCTTTTGAGAAGTTAAAAACCTCAAGCAGGtcacccccctccctctctggtCGTCTCTTTTTTATTCAtctgaactttatttaaatggctCTGTGCTTCCATTATCTCCTCCTCAGCTCTCTGTGGCTGTCTTTCTCCGGCTGTAATGAGTAGCCTGCCGTGTTTATTGAGCGTCTTTTGGCGATGTCTGTGATTCCCAAGGAACTGCAGACTGCCTTAATGATTGAAAACCTTGTCATACCTTCAGCTTTATCTGGGCTGGGGAAGgtcaacagaaaaaataaaatctttcatTTTATCTCCAGCTCCTAAGTAAGTGATTTGATTACTTGCAGTACCACTGGTGTACCGTGGTTAAAATATCTATGATACTGCTGCGTCTCTCCGTACAATTTAACCGTTCACGACCCCTTGATGAGTCACAAAGACTCATGGCTACTCCGAGtggtatgtttatttatgtcaatatttatttaattattcgttttttttccttccccatAAAAGTACAATTGAAACGTTTAACCTTGTAGTACTTTTAACTGTTGCATGGGaagcaagcaaacacacacacacacacaaaaccaatgCATATGAAAGGAGGAGTGCAAAGTGGGATAAGCCGGGTCCCCTGTGCCTCCCACACTCTGTCTTCAGCGCACGAACATTTCTGCACCTTTATTTTATCAGTGATTTATTGCAAGTGTCACCGAGCCTGTGTAGCATTCATCCCAGAATGCCTTTTACTAAATTGGCATTTGGAAATAACCAGATTACTTTGAGGACTCTGTCACAGCTTCGACACCCGTCCACCCATTGCCTGATCCCAGCCCCAGGCGAGGGATGGCTCCTGCTGCCGGCTTCCCTTGGGTGAATTCTAGAGGCCCGTGGCACTTGCACAGCAGGCCCCTGTGGAGTAATTTGGGCAAATGGGAATTTCTAGCACCTCTACGGTGAAGTGAAGGTTTGCCTTAACCCCCGGACTCTCCTCAGGGGTCTTTTCAGTTCAAACCGGATCTCTGTTTGAGTCTGAGATGCATCTTGCCCTTAATGACCCCCAGATTGGGAGTGCTGTTAAAATgaatccccctcccccaccaatccttttccttttttcccccttccccgtgggcggggggggggttgtcACTTCCCAACTGCAGTCATTATCATTCATCTCTACAGTGACTAACGACAAGCTCCTTGCACATTGTCACATGTCAGAGTGAGTGCTCTGTCTAGCACTGCAGTTTAGGCCCCGACTTCTCTAAGGCAggttttctctcttttatttttcatttcctccCTGTGGGACGGATGTTGCCGTCTGCCGGGCTGCTGGGGTGTGAACAGCCCCTCTGCCTTCTCGTCTGAGATCTGATTTATCGGCGgtgctgttttgtttagttcttCCTTGAATCCCGAAACCGGAGGACCGAGTCTGGGCCCGCAGCTACAGAACAGCAGATGTGTGTGGCGATAATTCAAGGTGACTCTGTCCCCGGCAGCTCGGAAACCCGGTCTCGGCTTGCCATTGTTTGATGTTGAAGGTGACACTATAGTGGGAGTTGCAGTGGGAACCCACAAACTCTTTTGAGACGGTCTCtgttttggggtgggggggtacatTTGCcaattttaacattgttttctctgataaacaaacagaaaaattgtttattttaaattgtgcacTTTGAACAGAATTCAAGTCTCcccattttccctttttgtcgAGTTGAGGCATCAGTAGAGCACGGGCACATGGGCTACCTAGAAGAATCTCCTTTTGTTTCATAcggatattttaattaatttaactacCTCTATCATTATGTTGTCATCTTAATATACATGATCAGATCCCTGTTCAGCAGTTTAGAGAGGGTTGAGAACAGATACTCATGCAGTCGGCTTGTACAATGCAATGCACTGATCCGTCTAGCTCAGTAAAAGACATCCTTTAGTCCAATAGCATTCGGTGTGTTAAGTAATTATGAACACGTTGTTTATTATAGAAATAAACTTCCGCAAGAACATCAACAAGGTTTACATGATGGCTAACAAAACGTTTTTGACTGTTAATGATTTGTATCtaaacactatttatttatttatttattttagaaatgctctttaaatgttaatgctgCTGCTACCGCTGCTTCCTCCAATTGAGTTGGTTAGTTGGGAGTATGCTCCTATCTCCATAAGGAACTCCTCTCCGGTCTCTTGTGTGTAAATGCTGATGTCTACGCTTTATGTGCAAGTTTACTGTTTCTCCGTGATGTACATACAGTGGTGCCtagaaaaaaaggagagaaatgACTTGCAGTGTCATATTAATCCCAAAATGGAGCTGttgcaataaacaaatacctGCACCCTTGCCTCCTGCTGGGAGAATGGATGTACAGCATCTGATTTATTCCTGTGTCGTACTGCATTAATGTCATTATCCTTTACTGCGTATTGAAGCAGAAAAACATGTAAGCAGGCCCTTAGCATattaaccccccctccccctcttcttttTCCTCCAACGATGACCCAGCTTCAAATCCCCCTAGCATCAGTGTAGCGCATTGCAACATCAGACTTGACCGCATCAGACTGAAGTTGAGCAAGTGTGTCAGTctttcccccccccacaacaGTGGGAGTCTTTTTACTTGCCTATCGCTCTACGtgaaagcttttaaaagcaGTATTCAAGAGCTAACTGTAACTCAATCAGTGTCATGGCTGTCTGATACAACGGTcctcaaaacaacacaaaaaacgaGTTTTAATATCGTGATTGGAAGTCATCTGGACTCGAGAAAAGATCAGATAccgttattgttgtttttcttgggaCACTGTACTGTTTGCACTGAGGACGGGCCTCCCCCAGTCCCCTGTATATTTATACTATCAACTAGCTCTCTGTCTTGACTGTCTGAAATGTCTTGTCTCGGTTTGAGTTGCatgtcagtgttgtttttttctggagtgttaattgtttaaataatctgaacagaagagataaatgaacaaatacgtacataaataaatccagtAATAACCATATGAAAGAGATTACATTTGCATGTGTTGTCAGTGATGCATCAATTGATATACAGCaatattttatcaaaataaagacaaagtGGAACTTTGTGTATCTGGGTTGTTTCCTTTTGGTTAAGAACACCATTACCTCTCCAGGTGGCCGTGCTAAAAACTAACGAGCATCTGCCTGACTATGGAAAAAGAAGTTGGGTGATCAGGTGATGggaattgggaaaaaaaaaagaccctcGTTATTTATAACACTGACCACTGGGTGGCAGTGTAAGTAATGGATAAAAACACTTGGCTAATGGGGACACAAATGgggaattgtatttgtataagtTCTTCATTGCTGCCCAAAACCCTCCGAGATGGCAGTGTCTTATGCCACTTTGGCTCTCGTTTCCGGTTGTGTACCCCCTGAGGCAGATGGACAACCTAATTTTCTCATAATGCTCTATGTGCCTAGTGCTGTGCAGTATTGCTGTTTGACTTTTCTGCAAACTGCCAGCCTTTGCCCATTCTTGTGTTATTGTCAATTTTCTAATGTTAAAGTGGGTGATTTTTaagctttgtttttgtcttttgtctgttCTCTCCATGGTTATTTCTATGTATTATTGGTGGAGTGTTGATCTAGTCATTTCaatcttgttttaaatgttgacGTTGATTTTATACTTTCTTTAGGTCGTTTTTACTCTTTCACTTGGTTGCAGATGACAGGGTTCATAGCTCAAATAAATGCCCAGTCttcataatgtgtgtgtgatgttttggTCTGTATTGCGTATTTAACTTTGTGCTGATAAAGTACGTTGTCA

Function

GO:

id name namespace
GO:0048752 semicircular canal morphogenesis biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19932 NCS1; neuronal calcium sensor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76759 lncRNA downstream 68555 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 142782 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 347232 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 1077400 10992899 ~ 10993246 (-) True G61206
TU76579 lncRNA downstream 1101047 10967180 ~ 10969599 (-) True G61203
TU76846 lncRNA upstream 308748 12394285 ~ 12395028 (-) True G61424
TU76910 lncRNA upstream 345265 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 408264 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 493134 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 633830 12719367 ~ 12743437 (-) True G61550
AMCG00020162 mRNA downstream 903 12052214 ~ 12069743 (-) True AMCG00020162
AMCG00020159 mRNA downstream 18435 12001700 ~ 12052211 (-) True AMCG00020159
AMCG00020153 mRNA downstream 81536 11973623 ~ 11989110 (-) True AMCG00020153
AMCG00020155 mRNA downstream 109758 11959617 ~ 11960888 (-) True AMCG00020155
AMCG00020151 mRNA downstream 226931 11818725 ~ 11843715 (-) True AMCG00020151
AMCG00020161 mRNA upstream 43071 12128608 ~ 12156720 (-) True AMCG00020161
AMCG00020160 mRNA upstream 89151 12174688 ~ 12184458 (-) True AMCG00020160
AMCG00020164 mRNA upstream 121155 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020167 mRNA upstream 286294 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020168 mRNA upstream 290596 12376133 ~ 12381749 (-) True AMCG00020168
TU76663 other downstream 369001 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1314227 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3230701 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3242537 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4508054 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 398832 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 398832 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 405161 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 405161 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 405161 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000052_02397395_02408461.mRNA False 562 mRNA 0.45 5 CI01000052 2397395 ~ 2408539 (+)