RNA id: AMCG00020160


Basic Information

Item Value
RNA id AMCG00020160
length 1878
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00020160
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12174688 ~ 12184458 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGGGTTTGTAGCCAGAGCTATGGCCAAGCCAGGCATGCTGAAGCCCTCGCACCTGGTGAAGCCCGTGTCGGTGACCAGGATACCTGGGAGGTACCTGGTCCACCAGGAGGGGCTCCCCAAGCTGCCGGTGCCACCGCTCAGACAGACGCTGGAGCGTTACCTGCGGGCGCTGCAGCCCATCGTCAGCGCAGAGGAGCTGGCGCACACGCAGCAGCTGGTGGAGGAGTTCCAGAGCTCCGGGGGCGTGGGAGACCGGCTGCAGAAGGGCTTGGAGCGCCGGGCCAAGAAGACTGAGAACTGGCTCTCAGACTGGTGGCTAAACACGGCCTACCTGGAGTACCGGCTGCCCGTGGTGATGAACTCCAGCCCTGGCGTGGTGCTGCCGCGGTTAGAGTTCACAGACCGCCAGGGACAGATACGgtTTGCTGCTAAACTCATCGCTGGGGTTTTGAATTTCAAATCCATGATCGACAATGAGACTCTGCCTGTGGAGTACCTGGGGGGGAAGCCACTCTGTATGAACCAGTACTACCAGATCCTCTCCTCCTGCCGCATCCCCGACCCCAAGAGGGACTCGGTGGTGAACCATGCCCGCTCGAAGAAGCCCCCAACGCATATCACTGTGGTACACAACTTCCAGTTCTTCGTCCTGGACGTGTACAACAGCGACGGGTCCCCCCTAACTGTGGATCAGATCTACATCCAGCTGGAGAAGATCTGCAACTCCTCCCTCCAGACCAACAAGGAGCCCATCGGCATCCTGACCTCCCAGCACAGGAACACATGGGGGAAGGCCTACAACAACCTCATTAAGGGTGAGGCGGTGGGCAGGGAGGAGGCTGGAGTCTGGGGAGACTTGGACAAGACGAATAAGGAGTCGGTGCGTGCCATCCAGAAGAGCATCTTCACGGTGTGCCTGGACGCGCCCATGCCGCGCGTGTCGGACGAGCTGTACCGCAGCCGCGTGGCTGCGCAGATGCTGCATGGGGGGGGCAGTCGCTGGAACAGTGGGAATCGCTGGTTCGACAAGACGCTGCAGTTTATCATCGGAGAAGACGGGTCATGTGGTCTGATCTACGAACACGCCCCCGCAGAAGGCCCGCCCATCGTGTCGCTGGTGGACCATGTGGTGGAGTACACGAAGAAGTCTGAGATGGTACGCTCTCCCATGATTCCCCTGCCCATGCCGCAGAAACTCCGCTTCAACATCACGCCCGAAATTAAGAAGGACATCGAGAAGGCCAAGCAGAACCTCAACATCATGGTGCACGATCTGGACGTGAAAGTGAGTGTGTTTACACACTTTGGAAAACACTTCCCCAAGTCGCAGAAGATGAGTCCCGACGCCTTCATTCAAATGGCCCTGCAGCTCGCTTACTACAGggTGTATAACCGTTGCTGTGCTACCTACGAGAGCGCGTCTCTGCGGATGTTCCGGCTGGGCCGCACCGACACCATCCGCTCCTCCTCCGTGGAGTCCCTGAACTTCACGCAGGCCATGGACGACCCCACGCGCCAGgCGATCCAAGGGCAGGCCATTGACCGGCACCTGCTGGGGCTGCGGCTGCAGGCCATCGAGGACCTGACCAGCATGCCTGAGATCTTCATGGACACGGCCTACGCGGTGGCTATGCACTTCAACCTCTCCACGAGCCAGGTTCCGGCCAAGACAGACTGTGTGATGTGCTTTGGCCCAGTGGTTCCAGACGGCTACGGCGTGTGCTACAACCCGATGGACGACCACATCAACTTCGCCGTCTCAGCCTTCAACAGCTGTGCGGAGACCAACGCTGCGCGGCTCTCCCAGGCCCTGGAGGAGGCCCTGCTGGACATGAGAGCGCTGCTGGTGCAGACACCCCAGTCCAAACTGTGA

Function

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00624 E2.3.1.7; carnitine O-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76759 lncRNA downstream 172597 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 246824 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 451274 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 1181442 10992899 ~ 10993246 (-) True G61206
TU76579 lncRNA downstream 1205089 10967180 ~ 10969599 (-) True G61203
TU76846 lncRNA upstream 209827 12394285 ~ 12395028 (-) True G61424
TU76910 lncRNA upstream 246344 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 309343 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 394213 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 534909 12719367 ~ 12743437 (-) True G61550
AMCG00020161 mRNA downstream 17968 12128608 ~ 12156720 (-) True AMCG00020161
AMCG00020158 mRNA downstream 89151 12070646 ~ 12085537 (-) True AMCG00020158
AMCG00020162 mRNA downstream 104945 12052214 ~ 12069743 (-) True AMCG00020162
AMCG00020159 mRNA downstream 122477 12001700 ~ 12052211 (-) True AMCG00020159
AMCG00020153 mRNA downstream 185578 11973623 ~ 11989110 (-) True AMCG00020153
AMCG00020164 mRNA upstream 22234 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020167 mRNA upstream 187373 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020168 mRNA upstream 191675 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020174 mRNA upstream 211097 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020175 mRNA upstream 230526 12414984 ~ 12418228 (-) True AMCG00020175
TU76663 other downstream 473043 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1418269 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3334743 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3346579 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4612096 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 299911 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 299911 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 306240 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 306240 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 306240 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile