RNA id: AMCG00020162


Basic Information

Item Value
RNA id AMCG00020162
length 1155
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00020162
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12052214 ~ 12069743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGGCTCATGGATAACGCGCTCTTGGTGGGTACTTGTGGTGCTTTGCGCACGCAGGGGCTCCGGCTCGCCCGGGCTGGGGCCGGACACTCGCCCCGGGGACAGCGCCTCCAGCCTGGCCTTCGTGTTCGATGTCACCGGCTCCATGTACGACGACCTGCAGCAGGTGACCGAGGGCGCATCTCGCATCCTGGAGAAAACCCTGAGCAGGAGGACGCGACCCATCCAAAACTTTGTGCTGGTGCCCTTCCACGACCCGGaCATCGGGCCTGTGTCTATCACCACTGACACCGAGAAATTCCAGCGCGACCTCCGGGATCTGTTTGTGCAGGGCGGGGGGGACTGTCCCGAGATGAGTTTGGGGGCCATTAAGAAGGCGCTTGAGGTCTCCCTGCCTGGATCCTACCTGTACGTCTTCACCGATGCCAGAGCCAAGGACTACCGCCTCAAACAGGAAGTCCTGCAGTTGATCCAGCTCAAGCAGTCACAGGTGGTGTTTGTTCTGACAGGGGACTGTGGGGACCGCTCCCAGCCGGGGTACAGAGCCTACGAGGAGATTGCGGCCACCAGTTCCGGCCAGATCTTCCACCTAGACAAGCAGCAGGTCAACGAGGTTCTGAAGTGGGTGGAAGAGACAGTGCAGTCCATGAAGGTCCACTTGCTCTCCTCAGATCACGAGAGTGGACAGGAGAATGAGTGGTTCGTGCCCTTTGACCCCAGCCTTAAAGAAGTCACCGTGTCTCTCAGCGGCCCGGGTCCCGAGATCGAACTGCGTGATCCCTTTGGTCGCAGTGTGGGAGAGGCTCTAGGCCTGATGGAGCTGCTTCACATCCCCAATTCTGCACGTGTGGTCAGTCTGAAGCACCCCCGGCCAGGCACCTGGACTCTGAGGGTAAGGGGGATACCTGCCCATGTCCTGTTGAAGTGCAGTGGTCTGAGCCCCCCCGGCCAGCTGAGCCAGATGGACCTGATGTCTGCAGCCGGCCGCTCCCTGCGCACCGTGCCCATCCCGCTGCCCTCTGACCAGGGCTCCCGGGGCCTCTGGAACGTTCCCGAGTTCCGAACCCCTTCCGAGAGCTTCTTCGTGAGGGTCACCGGGAAAGACGGGGAAGGCTACAAATTCCAGAGGCTGTCTACCATCCACCTGCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76759 lncRNA downstream 50123 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 124350 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 328800 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 1058968 10992899 ~ 10993246 (-) True G61206
TU76579 lncRNA downstream 1082615 10967180 ~ 10969599 (-) True G61203
TU76846 lncRNA upstream 324542 12394285 ~ 12395028 (-) True G61424
TU76910 lncRNA upstream 361059 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 424058 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 508928 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 649624 12719367 ~ 12743437 (-) True G61550
AMCG00020159 mRNA downstream 3 12001700 ~ 12052211 (-) True AMCG00020159
AMCG00020153 mRNA downstream 63104 11973623 ~ 11989110 (-) True AMCG00020153
AMCG00020155 mRNA downstream 91326 11959617 ~ 11960888 (-) True AMCG00020155
AMCG00020151 mRNA downstream 208499 11818725 ~ 11843715 (-) True AMCG00020151
AMCG00020139 mRNA downstream 864566 11181386 ~ 11187648 (-) True AMCG00020139
AMCG00020158 mRNA upstream 903 12070646 ~ 12085537 (-) True AMCG00020158
AMCG00020161 mRNA upstream 58865 12128608 ~ 12156720 (-) True AMCG00020161
AMCG00020160 mRNA upstream 104945 12174688 ~ 12184458 (-) True AMCG00020160
AMCG00020164 mRNA upstream 136949 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020167 mRNA upstream 302088 12371831 ~ 12375148 (-) True AMCG00020167
TU76663 other downstream 350569 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1295795 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3212269 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3224105 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4489622 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 414626 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 414626 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 420955 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 420955 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 420955 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile