RNA id: AMCG00020167


Basic Information

Item Value
RNA id AMCG00020167
length 2224
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00020167
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12371831 ~ 12375148 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTCCTCTCTCCAGGCTGCAGTAGCTGGTGGCGGCTGGCTGCAGTGCACTGGTGTGTGGAGCTGGGCGTGACCATGCCGTTCCTGCACGGGTTCCGCAGGATCCAGTACGAATATCAGCCCCTGGTGGAGCAGATCCTTAGTGCTGCGGGTGCAGAGGTGGGGGGGAATGCACAGGGCAGGGCCGCTGTGGAGGATGCTGCTCTCCATTGCCCCCTGGTGGAGCTGCTGGAGCAGGAGGCACAGTCGAGCGTGTTCCAGGAGGGCGTGAGCTGCGCGCTGTTCCGGGTGGCAGAGACTGGGTTGGTCTGGGCCGCTGAGGTTCTGCTGCGATATGGCGCCGACCTTAACTTTGAGGACCCTGTGAATTACTACAACCCACTGCACATTGCGGTGCTAAGGGCCCAGCCGGGGATGGTGGAGGCGCTGGTGAGACACGGAGCTGATGTCAACAAGAGAGATCGGATTCACGAGAGCAGTCCCCTAGACCTGGGCAGTGAGGAGGCCGAGAGGCTGCCCTGCCTGCGTGCTCTGCTGGACCTGGGCGCTGATGTCAACGCCAGGGACAAGAACGgaAAGACAGCCCTCCTCCATGCCTTAGCGAGCAGCGATGGCGTCACTGTCGACAACACTGACAGCATCCAGCTGCTCCTGGAGAGAGGGGCGGATGTCACAGCAGTAACGTCGGAGGGGGAGTCAGTGTTGTCTCCACTGGTGTTCCTGGTGAGGGAGGCCCTGGAGGGGGGGCCGGAGGAGGCAGCCGCGATTGGGGGGTTCTGCCTGCAGGCGACCCGGCTGCTGCTGGCACATGGCGCTGACCCGTCCCGCTGCCTTTGCCAGCAGCAGGACACAGAGAGTGGAGATgtagaggagggagggggagacaCAGGAGAGGCATGCCTGACCCAGACCTGCCTGGAGCATTTCGACCTGCTGTTCCCGCTGGCTGTGTTGCTGCTCCAGAGCGGCGCCAGTTTCCGCTGCTCCCTGCATGGCGCCCCCTGCTGGAGTGGATACAGTGTCATGGCTCACCGCCTCCGCACCGCGCTCCGGGAGAGCCAAGGAcacccccactccctctcctcctcctccccggcCACCATTCTCCTGAGCCAGGCTGAGCTGCTGATGGAGCTGGCCCAGGCCTCAGACCCCTCCGTCTCCCTGCCTCCGCCTTCTGGGACTGGGCTTGGGTTCGAGGCTGGGGCttcagagctggaggaggaagggaaggaagaagaagaagaggaggaggaggaagaagaggaagaggaggagggggaccCCAGCTGGAAGAAGTTGCGAGAGCTGTGCGGGCGTCTccgagagacagggagggagatggCTCCCCCAGCCCTGCGCCAGCTCTGCAGGGCCACAGTGCGCCGCTGCCTGCTGCCCCCCCCCTTGGAGCACAAGGCCACCCTCCTGCCCCTGCCTGAGAGGCTGAAGGACTTTGTGCTGCCCGAGCGCACCTACGCCCCTCCCCCGGGGCTGGACTGCTTCCGCCCCCACCGCACCCTGCGCTGAGAGGGGGCAGGGGCTGTATAGGGGGACACAAGgaagtgtgtgtatgagtgtatgagagtgtgtgtgtctgtgtagtagtgtgtgagtgtggtaAACTTACATGGCAACACAGTGATTGAGCAGATGATGAGCCCTATAGTCTGCAGATGGGGGTGGGGTGTCTGTTCAGTCTCAGATACAGGGGCTAGAACCTCACCTGGCATATCATGCTGCACTGCTTTGTACCGGCTTCAGTGTTGAACCCGAGGCTCCAGCTCAGGGAGCACGCAAAGGGTTAAAACTTCAGTGAAGCGGGTTTGGTGCCTCAGAGACGGACACTcgaacattgtttttttatattcctgCCAAACGTGCTTTATAACAGGCAGGCCGAGGACCAGCATCTGCCTGAACAAGGTGCCAAGGTGCGTCTGCATGGGCCTGTGtatacattcacacagacagtaCATACAGACTGTGGGCCAGATTAGGAAATTTACCATTGTGCTCAGACAGTATCTGTATCTGACTACCTGCCCATCTGTCTGACTGTCTGCCTGTCTGATAACGACTGCCTCTCTGTTTGACTGActtttcctgtctgtctgtctgtctgtctaaatCTCTCCACATTGTTGCAAATTGATCCCTGTTGAGCACAGCGATATCCCTGGCATTCTGAACATATTCTATGAATTAAAGACATATGACTGAA

Function

GO: NA

KEGG:

id description
K10328 ASB6; ankyrin repeat and SOCS box protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76759 lncRNA downstream 369740 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 443967 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 648417 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 1378585 10992899 ~ 10993246 (-) True G61206
TU76579 lncRNA downstream 1402232 10967180 ~ 10969599 (-) True G61203
TU76846 lncRNA upstream 19137 12394285 ~ 12395028 (-) True G61424
TU76910 lncRNA upstream 55654 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 118653 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 203523 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 344219 12719367 ~ 12743437 (-) True G61550
AMCG00020164 mRNA downstream 164279 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020160 mRNA downstream 187373 12174688 ~ 12184458 (-) True AMCG00020160
AMCG00020161 mRNA downstream 215111 12128608 ~ 12156720 (-) True AMCG00020161
AMCG00020158 mRNA downstream 286294 12070646 ~ 12085537 (-) True AMCG00020158
AMCG00020162 mRNA downstream 302088 12052214 ~ 12069743 (-) True AMCG00020162
AMCG00020168 mRNA upstream 985 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020174 mRNA upstream 20407 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020175 mRNA upstream 39836 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020180 mRNA upstream 109223 12484371 ~ 12509923 (-) True AMCG00020180
AMCG00020179 mRNA upstream 141658 12516806 ~ 12529593 (-) True AMCG00020179
TU76663 other downstream 670186 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1615412 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3531886 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3543722 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4809239 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 109221 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 109221 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 115550 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 115550 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 115550 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile