RNA id: AMCG00020168


Basic Information

Item Value
RNA id AMCG00020168
length 2347
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00020168
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12376133 ~ 12381749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGATGCTTACACATGCCCGCTCCCGACCGTAAAGCGAGTGAGGTGCAGCACAGCAGCGCCCGCTACCAAACCACTTTACGGCAACGTGTAGTCCTTCGGAGTCAGTTGCTCACCGGGTTGTGTCCGCTGGCGGAATAACGTCTCTAGCTGCATGATTGAAGGTCTTCGGACAGGCACACCAGCATGTCATGTCCCACCCTATTGGTCCTGTACGGCAGCCAGACCGGGACAGCCCAGGACACAGCCGAGCGGATTGGACGACAGGCCCAGAGGAGGCGGGTTGAAGTCAGGGTGGAGGCACTGGACAGCTACAATGTGgcAGATCTTATCACAGAGTCTCTGGTGCTGTTTGTGTGCTCCACCACAGGGCAGGGTGACCCCCCAGACAACATGAAGAATTTCTGGAGGTTCTTGTTCCGGAAGTCTCTGCCGGCAGGTTCTCTGTGTCGGCTGGACTGCGCAGTGCTGGGCCTGGGAGACTCCTCCTATCCCAACCCTGATGCCGTGATTGACCCCTGGCTCATTGCATTCTGGGACAGGGCGCTGGCTCTGTACCCACTTCCTGCCGGAGTGACCATGCTCAGTGAGAATGAGCTACTGCCCCCGAGATACGTCTTCAACTTTCTGGATGATGCCACAGAGGAGCCAGAGACCCTATCATGTGATGGGGGCATAGCTCCCCAGGCCCCACCATCCAGGGACCACCCCTTCCTGGCCAGGATGGTGTCCAATCAGAGAGTGACACTCCCCTCGCATTTCCAGGATGTGCGGCTCATCGAGTTTGACATTGAGGGCTCAGGCATGAAGTTCAGTGCAGGGGATGTGGTTCTGATTCAGCCCTGCAGTGACCGGGCCCATGTGGAACAGCTGTGCCAGCTACTGGGACTCAACCCACAGCGTCGCTTCACCCTCACCCCCACAGGCAACGCCCCGGTACCTCCACGGCTGCCCCAGCCCTGTTCTGTGCAGTACCTGCTGGAGAGTTTCCTGGACGTGGGCAGCGTGCCACGCCGCTCCTTCTTTGAGCTGCTGTGGGGCTTCGCCAGCGATGGGCTGGAGAGGGACAAGCTGGCGGAGTTCAGCTCGGCCCAGGGCCAGGAGGAGCTGCACAGCTACTGCAACCGGCCGCGCCGCAACGCCATCGAGGTCCTGACAGATTTCCCCCACACCACGGCAGCCCTGAAGGTGGAATACTTGCTGGACCTGTTCCCCGAAATCTCTCCGCGCTCCTTCTCCATCGCTTCCTCCCCACTGGTCCACCCCGGTCGACTGCAGATTCTGGTAGCAGTGGTTCAGTACCGGACCCGGCTGGTACACGTGCCTCTGTGGGTGAAGAAAGGAGGACTGAGGCTTCCCAGCGCCATAGACACCCCCGTGATCATGGTGGGGCCTGGGACAGGGGTGGCGCCCTTCAGAGCTGCCCTACAAGAGAGGATAACCCAGGGTGGGACAGAGAACGTGCTGTTTTTTGGCTGTCGCTCGCAAGCTGCCGATTTCTACTGCCGTTCGGAGTGGGAGGAGCTACAGAGGTCCGGTGGACTGACACTGTTCACGGCCTTCTCCCGAGACCAGGGGGAAAAGGTGTATGTACAGCATCGTGTGAGAGAGCAGGCAGAGCTGCTATGGGAGCTGCTCGCTCACAGGAACGCTCACTTCTACATCGCAGGCAATGCAAAGCAGATGCCGGCCGCAGTGTCCGAGGCGGTCAGTGCTGTGCTCCAGTCTCAGGGGGGCCTGGGCGCCATGCAGGccgaggagctgctgcaggagttGGAGAGACAGGGGCGCTTCCAGACCGAGACATGGTCCTGAGCCAGTCGGACTGGACAGAGGGGGAGCTGGAGAAAGAGGGGAGCACACTGGACTTCACTGGGGGACACAGAAACAGACTGCACTGGTTCCACCTGGACTGAATCGTCTTTTGGGGCTTTTGTGAGAtcaacacacatacagattCCCCATTCAGTTCATGGGCATCAGTGATGGGGATTGATACAGCATATGCAGCGTCTACTGACTAAACAGGAAGACACTACCggaatttttttttgtttttatcttttgcattacaattttctattattattattgggtcCACTGCTGGGTTACTGCTCCTGTCAGGGGGAAGGGAAGCCATCAATAAAACTGATGTGttatatggtgtgtgtgtgtgcgtgagttgGTACACGTTGATGAGGGCGGGTTTAAGCTGTCAGAGTGGGAAAGTGTAGCGCATTTCCGCCTCGAAAAACGACTACCAGTGAATCCACCCAATAAGGTGAGCGGTGcctgtgaataaattaatatattagcCAAAGACGCACGATGATTGGTTCGTGACGCACG

Function

GO:

id name namespace
GO:0043167 ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76759 lncRNA downstream 374042 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 448269 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 652719 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 1382887 10992899 ~ 10993246 (-) True G61206
TU76579 lncRNA downstream 1406534 10967180 ~ 10969599 (-) True G61203
TU76846 lncRNA upstream 12536 12394285 ~ 12395028 (-) True G61424
TU76910 lncRNA upstream 49053 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 112052 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 196922 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 337618 12719367 ~ 12743437 (-) True G61550
AMCG00020167 mRNA downstream 985 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020164 mRNA downstream 168581 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020160 mRNA downstream 191675 12174688 ~ 12184458 (-) True AMCG00020160
AMCG00020161 mRNA downstream 219413 12128608 ~ 12156720 (-) True AMCG00020161
AMCG00020158 mRNA downstream 290596 12070646 ~ 12085537 (-) True AMCG00020158
AMCG00020174 mRNA upstream 13806 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020175 mRNA upstream 33235 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020180 mRNA upstream 102622 12484371 ~ 12509923 (-) True AMCG00020180
AMCG00020179 mRNA upstream 135057 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020178 mRNA upstream 168821 12550570 ~ 12562984 (-) True AMCG00020178
TU76663 other downstream 674488 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1619714 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3536188 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3548024 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4813541 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 102620 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 102620 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 108949 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 108949 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 108949 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile