RNA id: AMCG00020174


Basic Information

Item Value
RNA id AMCG00020174
length 2940
RNA type mRNA
GC content 0.56
exon number 23
gene id AMCG00020174
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12395555 ~ 12408952 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGAGGCGCCGGCTTTTATAGCCAAGGGGAAGTCGCGCGAGACCACCGCGGCCATCGCGAGTGTGGCGCCAGCGTTTCGGCCCGCGCCCGGCGGCCATggtAACTGCATCTCAGCCCCTGCCCACCCTCTCTACCCCCTGCCCTCTCCCCCACCCTCCCACAGCCCCTCAGAGTGTCaaaagactgagagagaggagagcccaggggaggggggtgggaggCAGACAGCTTCAAAGGAAGCCGGGGCAGATGAAATCCTGGACATCTCTATTTGCGAGCTGACAGAGATCCCTGCCAGTGCTATCTCCATATGCAAAGTCCTGCAGAAGAAGGTGTTTATCCTACACAGCAACCAGCTGAGGTCCCTGCTGCCCAAAGGGAGCGACATCTCTGCACTGTACACGCTGAAGgtgctgGATCTGCATGAGAATAAGCTGACATGTCTTCCTGAGGAGATTGGGCAGCTGAAAGCTCTGCAGGTGCTCAATGTAGAGAGGAACCGGCTCCAGAGACTCCCAGAATCCATTGGGGACCTATGCCAACTGCAGACACTCAATGTGAAAGcaaacgAGCTGGGGGAGCTTCCTACCTCCCTGGGCCGCCTGGACAGCCTGCGCACGTTGGACATCAGCGAGAATAAAGTGAGGTCACTGCCCACTGCTCTGGCACACGCCCGCACGCTGGAGAGTCTGACCCTTGACGCCTCGGAGATGACCTTTCCACCCTCCAGCGTGTGTACAGCTGGCACGGAAGCCATCCAGCAGTTCCTGTGCgcagAGCTGGGCCTGGACTACTGCCCCCCCTCGCAGTACCTGCTGCCCGTGCTGGAGAGcgatggtggggggggtgcgGCATGGGACTGCGTGGACGGGGATCTGTCCCCCAGCACACAGGATGACAACCTCTGGCAGgagCAGAAACAGATGCAGAAGCTGGAGTTTGAACGCAGACTGGAGGAGGAGCAGCGGGAGCACACCCAGCTCTTCCTGCTCAACACCTCGCGCCGTGACGACATGCTGGAGTCCGTCCGACAGcatcAGCAGCGTTTGGAGCAGGACCTGTCCCAGCAGCAGCGCACCCTGGAGGTGGACCGGCAGCGGCTCCTGGCTCAGCTGCGCCTGGCCGAGACGGGCATCAGTGGGCGTATCACCCACATACTCATGGAGAACAAGAGACAGAGGAAGAGTGCAGAGTTCCTGCAGTCCCTGGAGGAGGACAGGATGCGCATGGAGAGGCTGATGGCCATCACGCAGGAAGAGGCGGAGTCTCTGCGCAAGAAGGAAGTGGCAGTGTTGTCTGCGATGAcatggatctctctctctctgtccagtcTGGAATCTCTTGACAAGAAGTTTGAACAGGTGCTCTCACTGCAGCAGCTGGACAAGAGCAAAGCCATCAACCAAATCCTACAGGAGGAGGAGATGCAGAAGGCAGCGTTCGAGGCGCTGCAGCTGCAGAGGGACGGAATGCACAGATTCATCCGCAACCAGATTAGGTTAATAGAAGCTGAATTAATGCAGTTGACTAAGCTGGAGGTAAAGAGGAGAGATCTGGACACTGAGAATATGCAGcagctcctcaAACAGAAGGACCAGAGAGAGATCGAGCTGCGACACATCCTGtcggAGATGGAGCTGAAGAGTGAGGCAACTCAGGAGAACTACTGGCTGATCCAGTACCAGAGATTGCTGGACTCCAAGCCCCTGTCACTGCGTGTGCAGGAGGCAGGTGTGGACAGGGCTCTGGTAGACCTGCTGTGTCGTCTCTCAGCTCAGCACTGTCTCCCCCTGCTTGCACACCATCGCATCACGGCTGAGACTCTGAGAAACATGTCCCCCGCTGACCTGCAGAAGattGGGATCAGTGAGGTGGGAGTACAGAAAGCTCTGCTGAAATGGGCTCAGGAGCAAGAAGCCACCACTGCAGGGCCATCCAAGGCATCCCCGCAGGAAGAGGTAGTGTGTCTGCCCCAACCTGTTGTTCCCAGTGCGCCCAGTGTACCCAGTGTACCCAGTGCGCCTAGTGCAGATGAGGCTGCAGGGAGCTCAGAGTGTGTGGTGTGCATGGAGCTGGAGtCTCAGGTGATCTTCCTGCCTTGCGGTCACGTGTGCTGCTGCCAGGGCTGCAGCTCCGCCCTGCTGTCCTGCCCGCTGTGCCGCGGAGACATCGCCCAGCGTGTCCGCATCTACCGCCTCTAGGGGGAAGGGCATCCACTCCCACACCTACGTCCCGGCACTGCCCCCAGCCTACTACAGAGGGTGTCTACCCACAGACCACCGACCCCACCCACtccttccttcctccctccctccctctgttgTACACACTCTGCACTTTTCCTCATCTGGAGAAAGACTCCAAAGAAGGACATGTCTCTctgattgtatgtgtgtgtgtggccagTGTCTCCTTGTGTCCCTGGCCTGTCCTTATGTCTCTCCCTTTCCTTTAAAATTAAGGCTGCTCCACCCCCCCTCCCGTTTTAACTCCCCGTGTTGGCCCCAACCCCCTGGCAGCAGTCTCTTCAGAAGTGCTCTTATCTGTAACTGTTGCGACTCCTCGCATGCTGTGACCCCCTCTGATCTTGTACTGTATAGAGATGACCCTATATATTCTACTGTCAGCCAGTGGTCAACATCAGATACCTGTGGACGTGGACttttaatctttaatcctcaCTTCAACTGCTCTATTTAAGACCCCTCACTCTCCCCTTCACattactcacacacatacacactgctcCAACAGCCAACGTGGACAGACTGCActttttgtggtgtttttatttttggatgtttgctttatgtttatgtttgttgtatccatttatattaTGGTCCTTTCATTGTATATGGCTGaaacacagtgaaaataaataatgaatgacatgaataaaataaagtctgaagtgaaaaatgcatttaaatcaa

Function

GO:

id name namespace
GO:0048666 neuron development biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10641 LRSAM1; E3 ubiquitin-protein ligase LRSAM1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76846 lncRNA downstream 527 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 393464 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 467691 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 672141 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 1402309 10992899 ~ 10993246 (-) True G61206
TU76910 lncRNA upstream 21850 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 84849 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 169719 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 310415 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 395718 12804670 ~ 12805433 (-) True G61558
AMCG00020168 mRNA downstream 13806 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020167 mRNA downstream 20407 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020164 mRNA downstream 188003 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020160 mRNA downstream 211097 12174688 ~ 12184458 (-) True AMCG00020160
AMCG00020161 mRNA downstream 238835 12128608 ~ 12156720 (-) True AMCG00020161
AMCG00020175 mRNA upstream 6032 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020180 mRNA upstream 75419 12484371 ~ 12509923 (-) True AMCG00020180
AMCG00020179 mRNA upstream 107854 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020178 mRNA upstream 141618 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020185 mRNA upstream 188707 12597659 ~ 12598234 (-) True AMCG00020185
TU76663 other downstream 693910 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1639136 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3555610 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3567446 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4832963 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 75417 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 75417 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 81746 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 81746 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 81746 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile