RNA id: AMCG00020175


Basic Information

Item Value
RNA id AMCG00020175
length 2175
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00020175
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12414984 ~ 12418228 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGTATGTTAGTCCCAGTATGGTGGTTCAGCGATGTCCCGTTTAACACTGTGTGGTGTCTCGTATGTTTTGAATACAGTTGTGGTTCTGTAATGGGAGTCGAGTTCGGTAAACCTGATAAATAGATACGTCATATATTCATAACACATGTTGTATACaagtgcatattttaaaaggatcCTTACATAGTGAAATAACCGGAGCTGTGTGGCGATGGCCGAGAGACCAGAGGACCTTAACCTGCCCAATGCGGTTATAACTCGCATCATTAAAGAAGCGCTGCCCGATGGTGTGAACGTGTCGAAGGAGGCGAGGAGGGCCATCTCGCAGGCCGCCAGTGTCTTCGTGCTGTACGCCACTTCCTGTGCCAATAACTTTGCGATGAAGGCGAAGAGGAAGACGCTGAATGCAGCAGATGTGCTGGCTGCCATGGAGGAGATGGAGTTCGACAGATTCCTGCAGCCACTCAGAGAGGCACTGGAGGccTATAAGAAGGGCCAGAAGGGGAAGAAGGAGGCGTCAGAGCAGAAGCGCAGAGACAAGAAGAAGAGCGATGCCGAGGAGAACGACAAGAGCCGGGAGGAGGAGaacgaagaggaggaggaggagcaggatgGCGAGAACGAGGctgaggaggaagaggtggAGAACTGAGGAATCCCCCTGGGTGAggggtggtggggagggggggcacaCACATGTGGATAAAAGGACTCAGCAGTGTAGAGACAGTGCTTTACCGAGAGGAATTACCTAGCACAGCTGGGGGGGGGCAGCACTCTGCATTGTAATTACATATCTAGAAAACTTGTGAGGTGAAGCGGTGTGTTTTGGAAAGTGCCATGAACTGATGGACAGAACATGAGGTCCTCTTTCCTTCTGCTGTCATGACTGTGGTAACTAACAGGAAACTGCAATAAATCAGTGGgtataagtaaaaaaaaaaaaaaaaaaattgtataatgATAGAAGTCTCTGTAAaccaaagcttttaaaatgcacagctgaACCTCACCACGGTGCAGATCTGGTGCTCTCTAACCACCACAAACCAGGATAGTGCTCAGTGCTGGAGCCTAGTGGTGATCTGTGGGGCTACAGTTAGATTTGCTCATAAGTACTTTACTTTTTTTGAGAAGGGAGGGGGGCAACTGGCTTTATTCCTCTCAGAAAAGCAGGCATCATGTCCACAATTGGGAACCTGAGTTTTATCAAAACTCCGTGATCCCTGCTAACATGTAGCATGGTATTGGATTCTGACCTCATCTGTGTCCCCAGACTTTGCAGGGAGCTCTCCCCCCACCTATATTTTACCTATCCTAGTTGAGGACACTGTACTCCCCCATCTCTCCCAGTCTCCTCCTCCTGTGAGGgctgcttgtttatttatagagTATTGTTACTCAAGTGATGCCTTAGCAACAACAGAGCAGCTGCTAAATTACAATGGTGTACCAGGATACAGCAATGATTCAgggatttcttaaaaaaaaaaaacaatggtccTCTTTCTGTAAGCAACTGAATAATTTGGATCTCAGTTATTCTCCTAAAAGGGATGGCAGAAATTAATACTTTCAGTCATCAATCAAGTTCAGCTGAAATACTGgaaaagtttaaattataaaaagtaaaactgcaGTCAAGTAAAGAATCCTGCTAAATAACTTAATAGAGGAacatcaaaagaaacaaaactggacTCTCTTCCATAAGTTATCTGTATAAACAAAACTCTAGGTATCCCACCCCATTAGACCTTTGTGGGCAGCTCAAGGGCATTTATAACCAGCACAGCTTCTCAGCCCCTGAAGCAGCTAAACTGGGACTCATACTCTACTCAGTCTCATCAGTCATTTCCAGTAGGAGATATCAGCCTGGTATTTTAAGTTGCCACTAAATCAGGAACTACAGCAGATAAGCCAATGAGACCGGTGCTATGGCTTGAGTGCTACTTTCccataaaaatgtgtattactcTGGGCCTCTCTCTCCATGCACTCGGGCGAGATGCAGGCCCTGGAATTCTGCACAACTGACAATCTTGGTCTCCTAACCACTTCCCTCCTCACAAGCAGATTCTTAGagccattacttatttttttaatccggGTGCAGTTGTATAGACTTGGGGCAGGGAGACTTTCCTTTGATGTACCTTTACttaaatgttt

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02326 POLE3; DNA polymerase epsilon subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76846 lncRNA downstream 19956 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 412893 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 487120 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 691570 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 1421738 10992899 ~ 10993246 (-) True G61206
TU76910 lncRNA upstream 12574 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 75573 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 160443 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 301139 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 386442 12804670 ~ 12805433 (-) True G61558
AMCG00020174 mRNA downstream 6032 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020168 mRNA downstream 33235 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020167 mRNA downstream 39836 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020164 mRNA downstream 207432 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020160 mRNA downstream 230526 12174688 ~ 12184458 (-) True AMCG00020160
AMCG00020180 mRNA upstream 66143 12484371 ~ 12509923 (-) True AMCG00020180
AMCG00020179 mRNA upstream 98578 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020178 mRNA upstream 132342 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020185 mRNA upstream 179431 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020184 mRNA upstream 200372 12618600 ~ 12619814 (-) True AMCG00020184
TU76663 other downstream 713339 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1658565 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3575039 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3586875 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4852392 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 66141 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 66141 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 72470 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 72470 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 72470 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile