RNA id: TU76875


Basic Information

Item Value
RNA id TU76875
length 2287
RNA type TUCP
GC content 0.41
exon number 6
gene id AMCG00020177
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12519764 ~ 12542261 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtattttattatttaaaatatttttttcaaattaaactttaGAGAAAGTAAAACAGACAACTGTGAAGCAGCACAGAGGTGAGAGAAATGCCGTCTCGGATCAGTAGCAAGCACATTAATTGAAAGTAGATCCTCTTTGTTCAGAACAATTAAATTCACATCGGGTTGAGCCCAGAAATTGCATGAATGTAAAAGGAGACAGGCCCACTTCCTGCAGGTTAAAAAGCCAGAATTGTTagcaaacatacaaagaaacaaagggCCTCATCTGGGTGTGACTGGGTGTGAAAGGGCTCCTGAACAAAAGTATTGACGGACTAGGGAGGatcaatcattattattattattattaataataattaagtcaTTTAGCACATGCATTCATCCAAGTTgacttgcatgtttttttttccagccatGGCTAACATGCAGTGctctatacatacacacaatcgCAGATTAATGTGAAATACAGAAGCTTAAAATGTTTATCCACCATGGGAGATGAAAACGAAAGAGCAAGATGATCAAATCTAATATTTTATATCCACTACTAAATCTatcttgaataaataataatttaaaaaaattatagaCCCTATTAATTTTTTGGACTCTCAAACTACAATTGAATGTATGACTAATCAACATAACATCAGGTAATAGATTATAATTAAAacctgcaattaaaaatatcaggCTTTATCATATGAAAATTAATATGTCTGTGATCATATCAGTTAATAGAATAAAACCCACATTACTTCACACGAACACGCTTGTTTTGATTCTTGCAGCCAATGGGACCCCTTGAAGCTGCCCTTCTAACATCACAGCTTGATGTCACACGGAcggtttttgtgttttctttaaaacatataaacttCTTGAttactatttattaataaaaacatccaaTGCGTTTTAtactgcaatattattttatacaatgtaaaattattctaaattttaatataatatttaactCTGGATATGGGAAGTAAGGTTTGGGACGAAAAAAGTCAGGGGAAAAGTTTAGGTCAATTAATACTTGAATTGTAACCAACTTTAAgcttatttgattaaataaataaaaaagattgaCCAGCCTATTACAAACTCAGAATCTTATATTTGTGTGGGGTATATAATCAATTTGATAggctttgttgtatttttaccCCTACAGTttgtataacattaaaaacattgataGATCCAGTACCCTAGATAGTGTGAAAGCATTAAATCCCCAAATTTgtatatgatttgtatttttctgactGGGCCTCTCAAACAATTTAGCAGCATAATGCCTCTGGTGaaaggtcaggggtcagggctCATGGGTCAGGACCGAGCTGTCAGTGAGGTATACTGTGTGTGGAGGGTTCCTGAAGCACCTTTTTCATGTGAACAGGCCCCAGATCACAGCCagtctcctctccctctctctctctctctctctctctctctctctgtctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctcgctctgtctctctctctctctctctctcgctctgtctctaGCCCCTGGCCCCCTTGGACAGAACATTGTCCTGGAAGTAGCCCTTGTTGGTGATGTTGCCGGGGGGATTGTAGAATGCCACAGAAATGAACATTCCATTTCCATCGGTGGCCAAGCCCAGCCCCACCTCCTTGGAGGATCGCCACACCATCTGAGTGAAGTTccctgggggagagagggagagagagagagagagagagagagacagagagagagagagagagagagagaggcagagcagCAGACCAGCAGACCAGCAGACCAACGAAGCTCTTCAGTGCTGATCGATCACAAGCccgaaaaacacagaaaagtatCCGCAGttCTCCGGAATACCAAAACAATGGCAGaCGACAAGCGCTCCAGCTTTGAGAAAGAGTTCCTGGACACCCACAACACCTACAGGAAGAAGCATGGAGCCCCGCCCCTGACCCTGAGCCGCAGTTTGTGCCAATCAGCGCAGTCCTGGGCTGACCACCTGCTGTCAATCAAAACCATGCAGCATAGTGACACTGAGAACGGAGAGAACCTCTACTATGCCTGGAGCTCCTCCCCCAAGAACCTGACAGGGAAGGAGGCGGTGGACAACTGGTACAGTGAGATAAAGGACTACAACTTCTGCAACCCTGGCTTTGGTGGCAACACGGGTAAGGGTGTCCGTAAGGGTGTCCGACACAAGCCCGCCAGTCAGGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76861 lncRNA upstream 13165 12499143 ~ 12506599 (+) False G61435
TU76869 lncRNA upstream 15165 12490997 ~ 12504599 (+) True G61440
TU76870 lncRNA upstream 15165 12490997 ~ 12504599 (+) False G61440
TU76862 lncRNA upstream 20336 12417810 ~ 12499428 (+) True G61435
TU76859 lncRNA upstream 20336 12489521 ~ 12499428 (+) False G61435
TU76896 lncRNA downstream 44509 12582261 ~ 12585656 (+) True G61460
TU77051 lncRNA downstream 292220 12829972 ~ 12852064 (+) True G61568
TU77088 lncRNA downstream 460098 12997850 ~ 12998227 (+) True G61588
TU77173 lncRNA downstream 799244 13336996 ~ 13338088 (+) True G61650
TU77193 lncRNA downstream 803201 13340953 ~ 13341315 (+) True G61668
AMCG00020169 mRNA upstream 37859 12479904 ~ 12481905 (+) True AMCG00020169
AMCG00020173 mRNA upstream 66979 12448768 ~ 12452785 (+) True AMCG00020173
AMCG00020170 mRNA upstream 88612 12428416 ~ 12431152 (+) True AMCG00020170
AMCG00020171 mRNA upstream 104813 12408962 ~ 12414951 (+) True AMCG00020171
AMCG00020172 mRNA upstream 124724 12381813 ~ 12395040 (+) True AMCG00020172
AMCG00020176 mRNA downstream 25408 12563160 ~ 12564443 (+) True AMCG00020176
AMCG00020182 mRNA downstream 113407 12651159 ~ 12651764 (+) True AMCG00020182
AMCG00020181 mRNA downstream 114464 12652216 ~ 12654743 (+) True AMCG00020181
AMCG00020187 mRNA downstream 127156 12664908 ~ 12690345 (+) True AMCG00020187
AMCG00020191 mRNA downstream 197123 12734875 ~ 12735213 (+) True AMCG00020191
TU76237 other upstream 2731712 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 6333680 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 7157901 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 7160399 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 7683967 4823813 ~ 4835797 (+) False AMCG00019967
TU76948 other downstream 78040 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 811925 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 1295418 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 1325725 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 1410674 13948426 ~ 13951047 (+) True AMCG00020267

Expression Profile