RNA id: AMCG00020178


Basic Information

Item Value
RNA id AMCG00020178
length 1869
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00020178
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12550570 ~ 12562984 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCCCAAACCTATTAAGGAAAAAAGTGTGGGTGTTCGGGGGCCTGGGTCAGCTGACGGACGGGCTGATCGGGCAGGACGACTTCCTGCAGACCCATCAGTACCGGATGTGGCCCGGGTATGACTACGTGGGCTGGAGAAACGGCAGCATGGGGCTGGGCTACGTGGAGATGGAGTTCACCTTCGACCGGCAGAGGAACTTCACCAGCATGAAGGCAAGGAGAGAGGGGGGCTGGGATGGAAGGACGGGTGAAGAGCCCCAGTTCTACCCCGTGCTGGATGACCGGAACCCGAGCGCACGCTTCGTCACGGTGCCGCTGGACGGGCGGGGGGGCAAAGCCCTGCGCTGCCGTTTCTCCTTTGCTGACACCTGGATGATGATCAGCGAAATCTCCTTCCAGTCTGAGACCACGCCCACTGAGAAGGATCACCATGACGACGAGAGCACCTCGGCCCTGATTGGTTGCCTGGTGACCATCATCCTGTTGCTCTTGGTGATCATCTTCCTGATCCTGTGGTGTCAGTACGTGTGCAAAGTGATGGAAAAGGGCCCTCGCCGTATTCTGGATGAAGATGTGACCGTGCGCCTGTCCTCCTGCAGCGACACCATCGTGATCCAGACCCCCCATGCCGAGCCCAGCTGTCCCGAGGGGGACCCCCCCTATGAGCGGTTCCCCCTCAGCTGTACATTTCCCTGTtccctctttctccttttctctatctctctccctccctgtgtctgtctctgtccttcAGCTCTTGTCTTCAGTAACCCAGCCTATGATCTGTTCCTCTCCACCTCCCCACCCCTCACTGTGCTATCCCGGCCCTGCCCCACAGCCACCCCCCAGACCCCCATCAACGACCTGACGCAGGGCACTCCTCACCAGTGTTTCCACAGCAGCGTGGAGCACTACGCCGAGACTGACATCGTCAGCCTGCAGGGCGTCACCGGGAGCAACATGTACGCCGTCCCCGCGCTGACCATCGACTCGCTCACACGCAAGGACATCTCCGTCGCCGAGTTCCCACAGCAGCGCCTCCTCTTCCGTGAGAAGCTGGGCGAGGGCCAGTTCGGGGAGGTGCACCTGTGTGAGGCGGAGGGGCTGGCGGAGTTCCTTGAGGGGGGCATCCCGATTCTGGAGCGGGACGGCCGGCCGGTGCTGGTGGCCGTGAAGCAGCTGAGAGCCGATGCCACCAAAAATGCCAGGAACGACTTCCTGAAGGAGATCAAGATCATGTCCCGGCTCAACGACCCCAACATCATCCggctactgtgtgtgtgtgtgacctctgaccccctgTGCATGGTCACGGAGTACATGGAGAATGGAGACCTCAACATGTTCCTCATGAGGGACCTGCTACACATGGCAACGCAGATCTCCTCGGGGATGCGGTACCTCGCATCCCTGAACTTTGTGCACAGAGACCTGGCCACGCGCAACTGCCTGGTGGACCGGCGGCTCACCATCAAGATCGCCGACTTCGGCATGAGCAGGAACCTGTACAGCAGCGACTACTACCGCATCCAGGGCCGTGCTGTGCTGCCCATCCGCTGGATGGCCTGGGAGAGCATCCTGCTGGGCAAGTTCACAACGGCCAGTGATGTGTGGGCATTCGGGGTGACCCTGTGGGAGGTCTTCACACTGTGTAAGGAGCAGCCCTACAGCCTGCTGACCGACGAGCAGGTGATCGAGAACACGGGCGAGTTCTTCAGGAACCAGGGCAGGCAGatcttcctgtcccCGCCGCCCCTGTGTCCCCCGTCTCTGTTCGAGGTGATGCTGCGCTGCTGGAGTCGAGACACCAAGGACCGGCCGCCCTTCCACAGGCTGTACCAGGCCCTGCGAGAGCACACTGCCTAG

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05125 DDR2, TKT, CD167b; discoidin domain receptor family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76926 lncRNA downstream 51144 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 98777 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 155542 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 548479 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 622706 11925564 ~ 11927864 (-) True G61302
TU76944 lncRNA upstream 15687 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 156383 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 241686 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 444438 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 774032 13337016 ~ 13338101 (-) True G61696
AMCG00020179 mRNA downstream 20977 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020180 mRNA downstream 40647 12484371 ~ 12509923 (-) True AMCG00020180
AMCG00020175 mRNA downstream 132342 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020174 mRNA downstream 141618 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020168 mRNA downstream 168821 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020185 mRNA upstream 34675 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020184 mRNA upstream 55616 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020186 mRNA upstream 78723 12641707 ~ 12646647 (-) True AMCG00020186
AMCG00020183 mRNA upstream 95329 12658313 ~ 12664512 (-) True AMCG00020183
AMCG00020188 mRNA upstream 190873 12753857 ~ 12759226 (-) True AMCG00020188
TU76920 other downstream 40633 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 45893 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 434854 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 658616 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 1032534 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 1101103 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1242036 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile