RNA id: AMCG00020179


Basic Information

Item Value
RNA id AMCG00020179
length 1638
RNA type mRNA
GC content 0.63
exon number 9
gene id AMCG00020179
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12516806 ~ 12529593 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtttGTTCTTGTTAAGAGATTGGAGAACAGGCTGAGAGGGGCGGGAGGCCACTTCACCCAGGTGGTGTGGAAGTCCAGCAAGGAAGTGGGTGTGGGTCTGGCCACAGATGGGGCGACCACCTATGTGGTGGGGCAGTACAGCCCCGCCGGCAACATCAGCAACCAGGGGTACTTCGAGAAGAACGTCCTGCCACTGGACACCCCAGTGAGTCAGGCTGAAGGGGGGACAGAGTCCCCAGCCAAGCCGAGCAGACCATCTCCGTCCCGTCCCGCCGCTGTCACCCCCCGCCCCGCACCACCACGGGGAACGACAGGCCAGTCGGACTTCCAGAGGGAGGCGCTGGAGGCCCACAATGCCCGGCGGCGGCTACACGGGGCCCCCCCGCTGAATCTGAACCCTGACCTCTGCCGTGAGAGCCAGGAGTGGGCGGACCACCTGCTGTCCCTGCGGGCCCTGCAGCACAGTACCACCAGCCTGGGGGAGAACATCTGGTACAAGTGGAGCTCCAACAAGACCGACGTGGTGTGGTGTGACTCGCAGGAGCTGGGCATTGCCAAGGCAACAGATGGCAAAGGGATGGTGATCGCGGTGGCACGCTACCGCCCAGCCGGGAATATCACCAATGCTGGCTACTTTCAGAAGAACGTGTTGCCACGCGGCACCGCACCACCGGGGGGCAGCAGGGAGGCCGCAGTGCAGAAACCACAGCCCCACAGCAGCCCAGCAAGGGAGAGGGGGCAACAGGCAGTGGACTCCATAGaatCGGACTCCTTCTCCAGAGAGTTCCTGCAGGCTTGCAACGAGCGACGTCGTGTCCACGGTGCCCCCCCCTTAGTGCTGAGCCCCGACCTGATCGGGGAGTCACAGCGCTGGGCAGAGACCCTGCTGTCCCAGAGTGTCCTTAAGCATTCACCCTGCGGACATGGAGAGAACATCTGGGCCAAGACTGGGGGCCCGGGGACCACTGCTACTGGGCACTTCACCCAGCTGGTCTGGCGCTCATCCCAagaggtgggggtgggtgtGGCCAGCAAGGGAGGCACCGTCATCGTGGTGGCCCAGTTCGAGCCTGCCGGCAACATCACCAACCCCGGCTTCTACGCGCGCAATGTCCTGCCCccggggtcaaaggtcacagaGCAGCCTGTAGTGGAGTCCCGAAGTGCAGGAGGAAACAAAGTGGCCCCTCTGCCAGACAGCACTCTGGCCCAGTTCTCCCGCTCTCTGCTCGAGACGCTGAATGGCTTCCGAAAGAAGCATGGAGCGAGGCCTCTGACGCTGAGCCCTGCCCTCTCCAAGGAGGCACGTGATTGGGCAGCTGAGCTGGTGCGGCTCAAGGCCCTGAAGAGCAGTGGCAATGAGCACGGAGAGAACCTGTGGTACCGCTGGGGCTCCAGTACAGCACCCCCTTCAGGCCCCTGTAATGACAAGCAGTTTggcagccagccagccagaTCGGTTATCACTCTGCCCAGGCAGATAAGGAAACGGCAGCAGAAACACAAGGCCCTGGCCCTACCGCTGCCTGCAAGCAGCCGAAGGTCGGGTTGCATCATCCCTGACTGGAAAACAAGTCACAGAAAGCCCAGCCTGGCTGTGTTGTCACCTCTGATCTCCAGGCCAGCTCCTGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76926 lncRNA downstream 17380 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 65013 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 121778 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 514715 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 588942 11925564 ~ 11927864 (-) True G61302
TU76944 lncRNA upstream 49078 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 189774 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 275077 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 477829 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 807423 13337016 ~ 13338101 (-) True G61696
AMCG00020180 mRNA downstream 6883 12484371 ~ 12509923 (-) True AMCG00020180
AMCG00020175 mRNA downstream 98578 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020174 mRNA downstream 107854 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020168 mRNA downstream 135057 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020167 mRNA downstream 141658 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020178 mRNA upstream 20977 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020185 mRNA upstream 68066 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020184 mRNA upstream 89007 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020186 mRNA upstream 112114 12641707 ~ 12646647 (-) True AMCG00020186
AMCG00020183 mRNA upstream 128720 12658313 ~ 12664512 (-) True AMCG00020183
TU76920 other downstream 6869 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 12129 12490698 ~ 12504677 (-) False AMCG00020180
TU76921 other downstream 20066 12484369 ~ 12496740 (-) False AMCG00020180
TU76916 other downstream 20066 12490698 ~ 12496740 (-) False AMCG00020180
TU76923 other downstream 20066 12490698 ~ 12496740 (-) False AMCG00020180
TU77089 other upstream 468245 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 692007 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 1065925 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 1134494 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1275427 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile