RNA id: AMCG00020180


Basic Information

Item Value
RNA id AMCG00020180
length 890
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00020180
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12484369 ~ 12509937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGTAAGTTATGTACAAGGGCAGAagtttgcactgtatttttggcATAAGTTACACTTCAATACGATTCAAACATGAGGGAGATCGTGCATCTGCAGGCTGGACAGTGCGGCAATCAAATCGGAGCTAAGAATTTTCAACACCGCTTCAACATGAGGGAGATTGTCCATCTGCAAGCCGGCCAGTGCGGAAATCAAATCGGCGCCAAGttctggGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGAGCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCTGGTGGCAAGTATGTGCCCCGTGCCATCCTTGTGGACCTAGAGCCTGGCACCATGGACTCTGTGCGGTCAGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTttctggGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGAGCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCCGGTGGCAAGTATGTGCCTCGTGCCGTTCTTGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCGGGACCCTTCGGGCAGATCTTTAGACCCGACAACTTTGTGTTTGGTGGCAAGTATGTGCCCCGTGCCATCCTTGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCGGGACCCTTTGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGTGGCAAGTATGTGCCCCGTGCCGTTCTCGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCTGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGG

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76910 lncRNA downstream 32578 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 89343 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 482280 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 556507 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 760957 11713501 ~ 11723414 (-) True G61273
TU76944 lncRNA upstream 68748 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 209444 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 294747 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 497499 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 827093 13337016 ~ 13338101 (-) True G61696
AMCG00020175 mRNA downstream 66143 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020174 mRNA downstream 75419 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020168 mRNA downstream 102622 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020167 mRNA downstream 109223 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020164 mRNA downstream 276819 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020179 mRNA upstream 6883 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020178 mRNA upstream 40647 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020185 mRNA upstream 87736 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020184 mRNA upstream 108677 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020186 mRNA upstream 131784 12641707 ~ 12646647 (-) True AMCG00020186
TU76663 other downstream 782726 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1727952 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3644426 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3656262 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4921779 7440803 ~ 7562592 (-) True G60516
TU77089 other upstream 487915 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 711677 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 1085595 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 1154164 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1295097 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile