RNA id: TU76919


Basic Information

Item Value
RNA id TU76919
length 469
RNA type TUCP
GC content 0.52
exon number 4
gene id AMCG00020180
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12484369 ~ 12509937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGAGTGGGCGGTGCTTAAACAGGGATGAAAAAAGAGGGTGATATATAAAGCTCGGGGCGTGAGGATTGGTTAGAGAAGCAGAGAAAGCTGTGgagttgttggtttgttttttttatttatttatttattgttcaggTGTTTGATTAAAGTTTCGACTTAAAAATGAGGGAGATTGTTCACCTGCAAGCCGGACAGTGTGGAAACCAGATCGGGGCCAAGTTCTGGGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGACCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCCGGTGGCAAGTATGTGCCCCGTGCCGTTCTCGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCTGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76910 lncRNA downstream 32576 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 89341 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 482278 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 556505 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 760955 11713501 ~ 11723414 (-) True G61273
TU76926 lncRNA upstream 7467 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 92337 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 233033 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 318336 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 521088 13007422 ~ 13007666 (-) True G61593
AMCG00020175 mRNA downstream 66141 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020174 mRNA downstream 75417 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020168 mRNA downstream 102620 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020167 mRNA downstream 109221 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020164 mRNA downstream 276817 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020179 mRNA upstream 30472 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020178 mRNA upstream 64236 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020185 mRNA upstream 111325 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020184 mRNA upstream 132266 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020186 mRNA upstream 155373 12641707 ~ 12646647 (-) True AMCG00020186
TU76663 other downstream 782724 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1727950 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3644424 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3656260 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4921777 7440803 ~ 7562592 (-) True G60516
TU76915 other upstream 4364 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 4364 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 4364 12490698 ~ 12492565 (-) False AMCG00020180
TU76923 other upstream 4364 12490698 ~ 12496740 (-) False AMCG00020180
TU76920 other upstream 14090 12500424 ~ 12509937 (-) False AMCG00020180

Expression Profile