RNA id: TU76920


Basic Information

Item Value
RNA id TU76920
length 393
RNA type TUCP
GC content 0.53
exon number 4
gene id AMCG00020180
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12484369 ~ 12509937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAGCAGCAGCGGACTGTAAGTTATGTACAAGGGCAGAagtttgcactgtatttttggcATAAGTTACACTTCAATACGATTCAAACATGAGGGAGATCGTGCATCTGCAGGCTGGACAGTGCGGCAATCAAATCGGAGCTAAGttctggGAGGTGATCAGCGACGAGCACGGCATAGACCCCACTGGGACCTACCATGGAGACAGTGACCTGCAGCTGGAGAGGATCAATGTGTACTACAATGAAGccacagGTGGCAAGTATGTGCCCCGTGCCGTTCTTGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCGGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76926 lncRNA downstream 998 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 48631 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 105396 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 498333 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 572560 11925564 ~ 11927864 (-) True G61302
TU76944 lncRNA upstream 68734 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 209430 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 294733 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 497485 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 827079 13337016 ~ 13338101 (-) True G61696
AMCG00020175 mRNA downstream 82196 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020174 mRNA downstream 91472 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020168 mRNA downstream 118675 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020167 mRNA downstream 125276 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020164 mRNA downstream 292872 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020179 mRNA upstream 6869 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020178 mRNA upstream 40633 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020185 mRNA upstream 87722 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020184 mRNA upstream 108663 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020186 mRNA upstream 131770 12641707 ~ 12646647 (-) True AMCG00020186
TU76921 other downstream 3684 12484369 ~ 12496740 (-) False AMCG00020180
TU76916 other downstream 3684 12490698 ~ 12496740 (-) False AMCG00020180
TU76923 other downstream 3684 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 7859 12490698 ~ 12492565 (-) False AMCG00020180
TU76919 other downstream 14090 12484369 ~ 12486334 (-) False AMCG00020180
TU77089 other upstream 487901 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 711663 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 1085581 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 1154150 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1295083 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile