RNA id: AMCG00020185


Basic Information

Item Value
RNA id AMCG00020185
length 576
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00020185
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12597659 ~ 12598234 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACACCAGATCCAACAGCCTGCTCCTGTCCATCTCTGCAGAGCACTCGTACGCGGCGCACTCGTACCGGCCGATGGCCCGCAGTACCCAGCCCGAAATCTTCACCTTCGAGCGGCTGCCCGAGCCCGACCGGCGCCGCAGCTCGCTACACCGCAACAAGAGGAGGACCACCCGGGTCCTGTACCCGTCCAAGGTGCGCAAGTACCTGCCGCCGCCCGAGAAGAGTCTGATCAAGCGCTGGCTGGTCGCCCTCTGCCTGGTGGTGTGCCTGCAGATCTACACCGAGGAGCCCTGCGCGGAGACGGCGGTCGTTGGCGAGGGCTCTGGCGAGGACCTGCGCTTCTCCGAGCTCcagctcctgcctttcctctccgcCGAGCTGAAGGTGCCGGAGATGGATAGCTACGCGGCCGGGCAGCAGCGTCTAGAGGAGAGCACGGCGGACCGGGTAGACAGCGAGGACCTGAACTCAACGTGTCCCGACTGGTACAATGAGGTGGCCAGGATGTCTGTGCCCAGCAGGCAAAGTGGCTACGTGGTGGCTCTCCTCTACCCCGTCTATCACAACCTGTGA

Function

GO:

id name namespace
GO:0031231 intrinsic component of peroxisomal membrane cellular_component
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0044438 obsolete microbody part cellular_component
GO:0044439 obsolete peroxisomal part cellular_component
GO:0031903 microbody membrane cellular_component
GO:0042579 microbody cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76944 lncRNA downstream 13911 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 98233 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 145866 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 202631 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 595568 12001700 ~ 12002091 (-) False AMCG00020159
TU77020 lncRNA upstream 121133 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 206436 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 409188 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 738782 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 848768 13447002 ~ 13450062 (-) True G61729
AMCG00020178 mRNA downstream 34675 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020179 mRNA downstream 68066 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020180 mRNA downstream 87736 12484371 ~ 12509923 (-) True AMCG00020180
AMCG00020175 mRNA downstream 179431 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020174 mRNA downstream 188707 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020184 mRNA upstream 20366 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020186 mRNA upstream 43473 12641707 ~ 12646647 (-) True AMCG00020186
AMCG00020183 mRNA upstream 60079 12658313 ~ 12664512 (-) True AMCG00020183
AMCG00020188 mRNA upstream 155623 12753857 ~ 12759226 (-) True AMCG00020188
AMCG00020190 mRNA upstream 164175 12762409 ~ 12766384 (-) True AMCG00020190
TU76920 other downstream 87722 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 92982 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 399604 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 623366 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 997284 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 1065853 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1206786 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile