RNA id: AMCG00020188


Basic Information

Item Value
RNA id AMCG00020188
length 1175
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00020188
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12753857 ~ 12759226 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgtaagTGGACAGGTTAGTGGGAGGCGAGGCATCCCTGCGGGAGGGGGGGCATGTGGGGCACTTACACTCCTCTTCAGTGTCTCTGCCCCAGCAGTCAGATAGCTgctgcagacacacagtgaAGATGATGGCTCCTCTTGTCCTCTTCCTCTTGTCCGCCTGGCTGGCCCTAGCCTGGGGGGGGCCCTTGCCTGACCGTCCCGAGATCCAGGTGCAGGAGAACTTCGACATGGACAGGTTCCTGGGGAAGTGGTATGACATCGCTCTGGCCTCCTCCTGCCCCTGGGCCACTGATGACTTCAGCCAGATAGCCATGACCACGACCTCCATCAGaCACGGTGTGTGCAAACAAGTCTCGGGCTTCTACAAGACGGACGCCCCTGGACGCTTCACCTACCACAACGCCAAGTGGAACATGGATGTGGACTCCTATGTCGTCCACACGAACTATGACGAGTACGCCATCGTGATAATGTTCAAAATGAATTCAGGAAAGAACTCTTCCACCACTGTCCGACTGTACGGACGCACCCAGGAACTGCGCCCCAGCCTAATCACAGATTTCACCCAGATTGCCAGGGATTTAGGCATCCAGGAAGACAGCATCATTACTTTACCCAAGAAAGACGAGTGTGTTCCTGGAGAGCAGGTGGAGGAGCCAGTGGTCAAGaGAGTGCAGAGGGAGACGGTCCTGGAACCCACAGAAGGATCAGGAGATGACACCACCATGTTCCGAAATTCAGACTCGTGTAACCTGTCTCCGGATGCGGGGCCGTGTTTCGGCTACATCCCGAGGTTCTTCTACAACTCCTCCCAGATGGCGTGTCACATATTCACCTACGGGGGCTGCATGGGCAACGGGAACTCTTTTGTGACAGAGAAGGAGTACGTGGGCCCCTGCTCTGCCAGCAATGACCTGTGGGCATTCGACTCCCAGATTGGCAAGTGCGTGGCCTTCAAGTACGGCGGCTGCCAGGGCAATGGCAACAAGTTCTACAGTCAGAAGGAGTGCGAGGAGTACTGCGGCGTGATGAAGGATGgtgaTGATGAGCTCTTGGGTCTCCCTGGAAAGAACTGAGCGAGGGACCCCTCAGCCTGTCCACCCTGTCTtgctcacactcacacatgcacccCTGTCAGGTtgctacaaataaataaacaacttggAAATAC

Function

GO: NA

KEGG:

id description
K23620 AMBP; protein AMBP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77020 lncRNA downstream 10420 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 170109 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 254431 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 302064 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 358829 12394285 ~ 12395028 (-) True G61424
TU77034 lncRNA upstream 45444 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 248196 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 577790 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 687776 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 819183 13578409 ~ 13653379 (-) True G61803
AMCG00020183 mRNA downstream 89345 12658313 ~ 12664512 (-) True AMCG00020183
AMCG00020186 mRNA downstream 107210 12641707 ~ 12646647 (-) True AMCG00020186
AMCG00020184 mRNA downstream 134043 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020185 mRNA downstream 155623 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020178 mRNA downstream 190873 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020190 mRNA upstream 3183 12762409 ~ 12766384 (-) True AMCG00020190
AMCG00020189 mRNA upstream 7439 12766665 ~ 12776416 (-) True AMCG00020189
AMCG00020193 mRNA upstream 23097 12782323 ~ 12790560 (-) True AMCG00020193
AMCG00020196 mRNA upstream 50248 12809474 ~ 12810528 (-) True AMCG00020196
AMCG00020195 mRNA upstream 51437 12810663 ~ 12813210 (-) True AMCG00020195
TU76920 other downstream 243920 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 249180 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 238612 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 462374 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 836292 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 904861 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1045794 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile