RNA id: AMCG00020189


Basic Information

Item Value
RNA id AMCG00020189
length 2866
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00020189
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12766665 ~ 12776416 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCTCCCCGCCCGCCTCTGTGCGGCTGCGCATCTCGGCATAAAGTCCATCAACTGATGAGGGGCGGTTGAGAGGACATCTCTGTCCCAGACGAGCTGCCGCGACCCAATGCAATGGGCATCACGATATGCAACTAAACCACAGGCTGCAGAAGGATGGACCCGTTTGAAGAGACACGTCCGTTGCTGAGGGGTCCGGTGGTTAACGAGGAGGATCCCCTGTCGCCGCCGGACGGGGCGGAGCAGCAGAGCGACCTCAGCAAGGTGAAGAATGGCAAGCTGTTCCTGGCCACCTTTGCTGCTGTACTGGGGCCCCTGAGTTTCGGGTTCGTCCTGGGATACAGCTCCCCTGCCATCCCCAACCTGAAGACCATCGACAACCCCCGACTGCGCCTGGATGAGGAGGAGGCGTCCTGGTTTGGGTCTGTGGTGACGCTGGGCGCGGCGGCCGGGGGGCTGCTGGGCGGCTGGTTGGTGGGGAGGCTGGGCCGGAAGCTCACTATCATGGTGTGCTCACTGCCCTTCATCTTCGGCTTCACCATCATCATCTCTGCACAGAACCTGTACATCTCAGAGACCGCCCACCCCCGGGTGCGAGGCATGCTGGGGTCCTGCGTCCAGCTCATGGTGGTCACTGGGATCATGGGAGCTTACATAGGAGGGCTGCTGCTGGACTGGCGCTGGCTGGCAGTGCTGTGCTCAGTGCCGCCCACCCTGATGCTAGGGCTGATGTGCTTCATGCCCGAGACGCCGCGCTTCCTGCTGGCTCAGGGCCGCGAGGTCGAGGCGCTGGCCGCTCTGCGCTTCCTGCGCGGCCCCGACGCCCCGCTGCACTGGGAGTGCGCGCAGATAGAGGCTGCAGCCAGGCAGCAgGGAGCTGGCGGGTTCAGGCTCAAGGACCTCCAGAGTCCTGGGCTGTACAGGCCTCTGCTGGTGGGCGTCCTGCTGATGCTGTTCCAGCAGCTCACGGGCATCAACGCCATCATGTTCTACGCAGAGACCATTTTCGAAGAAGCCAGTTTCAAGAACAGCAACGCTGCCACAGTGATGGTGGCGGCCGTGCAGGTGGTGTTCACAGCAGTGGCCGCTCTCATCATGGACCGGGCGGGCAGGAAGTTGCTGCTGATTCTCTCAGgggtgTGCATGGTGGTCAGCACGGCTGTGTTTGGGGTGTACTTCAGGATTGTAATCCCAGCCCCAGGAAACTCCTCTCTGGATGGGATTGCCCCCCCAAGTCCCAGCATACCCCCCACTGAGAATGACCTGGCCTGGCTTGCTCTGGCCAGTATGGGACTCTTCATAGCAGGTTTCGCCCTGGGCTGGGGCCCCACCCCCTGGCTGGTGATGTCGGAGATTTTCCCAGCGAGGGTGCGGGGCTTCGCGAGCGGCGCCTGTGTGCTCGTCAACTGGACCTCCGCCTTCCTCATCACCAAGGAGTTCCACCACCTCATGGACCTCATGACCAGTGCGGGGACCTTCTGGCTGTTCTCCGGGTTCTGCGTCCTCAACGTCTTCTTCACCATCTTCTTAGTGCCGGAAACAAAGGGCAAGTCTCTGGAGCAGATCGAGGCCCACTTCAGGGGGACCAGCTAGGGCTGTCGATCTAGCCTTTCACACCCGGTTCTGGTCCGGACTAATAAgcacaccaaaataaaaaaaaaagaacaacgaCAAGAAACAATGCCATCCATCTGTGCTTTACAGTAGCACCGTCCTACTCCTGCATCTAGCTTTCcaactgacatttttattttttgaggtGAACTAAGGAGACGTGAAGCACTGAGCCAACCTGAAGAAAACTTGATCGTGACAGAATGACctctaattttgtttttgttgtcgttttatttttatcaccaTTTATTGCTCGGCAAGCACAACGAGAGGTGTGGAAGCCGCCGGGCTGCAGGTGCTGCGCTTGTCTGTCACAGAATGGACCCACCAAATTATAACTCTGACCTGCCTGTGAATTATGGTTAGCGATTTGCTGGTGAGGTCCGTTTGGATTTGGTCCAGCCCAGTGTCTTTTTGTTCTTCGTTAACTACAGCCAGGGAGCAGGCGCTGAACCTGTGAGCTGTAACCAGGATTAGCTCTCAGATGAGCCAAACTGTTTGAGCAGAGTCATCTTGTTAGTATGTGTGCCTGGTAGAAGTGGTGTACACTGGTACACACAGTAACcaaaaagattattattttcagggACTCTTTGCAGTTCACAAAAGCCACACTCCAGTTGTGTTTTGCTGTGCTTTGTGATTCATTCTGACAGGAGCCGTGTTGGCTGAGCCTGACAAGGCCCAGGACACACCAACCACCTTCTGCAGGCCGGAGACGCCACACACAGCTTGTTTTGTAGCCGTGCCTAGGAGCCGACAACACAAGAAACTGGTTACTGGGACGTGCGAACGCTGCTGCATGCTCCAACCTTTCGAGAGGACCTTAATAAAATCCTTCTTTCTTGTGGTCGTTGTTGTTCATTGTAATGACAGAGTGTGATTTGTACGGGACAATTTATCATAGTCTGGTTTTGGATTTCAGCCCTGGGGACAGTTCTCCAAGACCATTTCATACAGAggaagttatatatatttaaacaatccCTGTGTTTTTGATACAGGAGTCTGGAAGGACTCTTGCACAGCTTGCAAAAAGCTTTGTTTGTTCTTTGAGTCTAAATGAGTTTTACAAAGTACCCCAATATATCAATGTCAATACACTGGTGAGGGGGGAGGGCTgctgcattaaatatttataatattaaattcttttttttttatatacaactGAGCGTTACTGGTCTCCACGGAGACTGTTGGATTTCTGCAAGTATCctgtagttattttttgttttgcagtaatGGG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08145 SLC2A8, GLUT8; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77020 lncRNA downstream 23228 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 182917 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 267239 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 314872 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 371637 12394285 ~ 12395028 (-) True G61424
TU77034 lncRNA upstream 28254 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 231006 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 560600 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 670586 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 801993 13578409 ~ 13653379 (-) True G61803
AMCG00020190 mRNA downstream 281 12762409 ~ 12766384 (-) True AMCG00020190
AMCG00020188 mRNA downstream 7439 12753857 ~ 12759226 (-) True AMCG00020188
AMCG00020183 mRNA downstream 102153 12658313 ~ 12664512 (-) True AMCG00020183
AMCG00020186 mRNA downstream 120018 12641707 ~ 12646647 (-) True AMCG00020186
AMCG00020184 mRNA downstream 146851 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020193 mRNA upstream 5907 12782323 ~ 12790560 (-) True AMCG00020193
AMCG00020196 mRNA upstream 33058 12809474 ~ 12810528 (-) True AMCG00020196
AMCG00020195 mRNA upstream 34247 12810663 ~ 12813210 (-) True AMCG00020195
AMCG00020194 mRNA upstream 42514 12818930 ~ 12827022 (-) True AMCG00020194
AMCG00020198 mRNA upstream 104248 12880664 ~ 12887861 (-) True AMCG00020198
TU76920 other downstream 256728 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 261988 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 221422 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 445184 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 819102 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 887671 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1028604 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile