RNA id: AMCG00020190


Basic Information

Item Value
RNA id AMCG00020190
length 773
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00020190
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12762409 ~ 12766384 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCCTGGTATAAAAACCTTCCCTCTGGCTCTGTAAGTTCAACTCGGTTCATTTTGCTCTAGTCATCGTCTGGTTGCTGTTAGTTGTGCTCCAGAGACAAgtgaggaagagaagaaaacagcAGACAAAAACTCAAAATGGGAtccctgctgctgtgtgtccagcTGGCTCTGCTCTGCACACTCTCTGTCAAGGCGGACGTCCAACCCCAGAAAGACTTCAACCTGCAAAAGTTCGCTGGGAAGTGGTACCGCGTGGGGCTGGCCTATGACTCCCCCGCCTTCATGCCGTACCGGGACAAACTGCGCGTGGCCATGGGGATCCTGAGGCCGATGGACAACGGGGACGTCAACGTGACCATGTGGAGCTTGAGGTCCCCCGGCTGTTACAGTCAGGTCTACGTGTACGAGAAGATGGCCGTGCCAGGACTGTTCAGCTACTTCAGCACACGCCATAACAGGGTGAAAGACATCACCATCGTGGAGACTAACTACAACGAGTACGCGCTGGTCCTCAAGCACAAGAACAGGTTGGACAAGGACTTCACACAGGTGGCTCTCTATGGCCGCACACTGAAGCTCAGGCCAGAGCTGGTGGAGAAGTTTCGGCAGTTCGCTCTGTCTCGCGGATTCTCCAAGGAGTCCATCGTGATCCCCCCCGCAGAAGAGAGCACAGCCTGGAACTCGTCAAGCCTGGGGATCACGCCAACTGTTTTCAGTGCCAAAGAGGTTCTCAATTCCactgagacaaacacacagaacaacTGGGACTAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006810 transport biological_process
GO:0005576 extracellular region cellular_component
GO:0036094 small molecule binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K01830 PTGDS; prostaglandin-H2 D-isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77020 lncRNA downstream 18972 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 178661 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 262983 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 310616 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 367381 12394285 ~ 12395028 (-) True G61424
TU77034 lncRNA upstream 38286 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 241038 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 570632 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 680618 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 812025 13578409 ~ 13653379 (-) True G61803
AMCG00020188 mRNA downstream 3183 12753857 ~ 12759226 (-) True AMCG00020188
AMCG00020183 mRNA downstream 97897 12658313 ~ 12664512 (-) True AMCG00020183
AMCG00020186 mRNA downstream 115762 12641707 ~ 12646647 (-) True AMCG00020186
AMCG00020184 mRNA downstream 142595 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020185 mRNA downstream 164175 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020189 mRNA upstream 281 12766665 ~ 12776416 (-) True AMCG00020189
AMCG00020193 mRNA upstream 15939 12782323 ~ 12790560 (-) True AMCG00020193
AMCG00020196 mRNA upstream 43090 12809474 ~ 12810528 (-) True AMCG00020196
AMCG00020195 mRNA upstream 44279 12810663 ~ 12813210 (-) True AMCG00020195
AMCG00020194 mRNA upstream 52546 12818930 ~ 12827022 (-) True AMCG00020194
TU76920 other downstream 252472 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 257732 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 231454 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 455216 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 829134 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 897703 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1038636 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile