RNA id: AMCG00020194


Basic Information

Item Value
RNA id AMCG00020194
length 2031
RNA type mRNA
GC content 0.59
exon number 13
gene id AMCG00020194
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12818930 ~ 12827022 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCCCCCGATGAGAAAGGACTTCATATCTTTAACCCTAACTGAGCAGGACAGCCGGAACTACAACAACAGCAAGAACTGGCGCCGACAGTCCTGCTGGAGGGTCAGTCCATGTCCTTTAGGTGCTGTCTGTTACCCAGGGAACCGCTGCCCAGGCAGCCCGGTTCCGGTCCGTCTTTTGTCGGATGGTGCTCCAACTAGTGAGCCGAAAGATGCAGTGGAACCGAAATGGAAGCAGCTGTCCCGGTTGCAGCGCAGTCTGATTCTCTTCCTGCTCGCGGTGCTGGTGGTCTGTGGGATCGCAACCTACCCGAGCCTGGCAGAGCGCTGGGGAGAGCCACTGGCCTACAGAGATTACTGGTTTTACAGTACAGGACACCCTTCTTTTCAGAAGCAGAGAAAGCCTTTCCCCAACAAGCGCGGCCCGCCTGGCTTACAGCACCGCGTCCAGAAGAGAGGGAACATCTCCGAGTCGGAagtgaaggagagggagggtCCGGCGCTCAAGGGCGgagcagaggaggaagagggagagaagccGCTggtcagCTGGCACGGGGCGATGATCGAGGCTGACCAGGCCACGGAGCCTCAGCCCTCTGCCAAGGAGAACGAGGCCCCCTTGTCCTTAGACCGAGGTGTGCAAGTGCCACCTGCACCAGGGGGAGTGAGCGAGAGGCAGGAGGCTGTAGTGGAGGCCTTCAGACACGCCTGGAAAGGCTACAAGGAGTTTGCCTGGGGCCATGACGAGCTGAAGCCCATCTCCAAGTCCTATGGCGAGTGGTTCGGATTGGGCCTGACGCTCATCGATGCGCTGGACACTATGTGGATCCTGGGCCTGAAGGAAGAGTTCAAAGAAGCCAAGCAGTGGGTGTCGACAGAGCTGTCCTTCACCAAGAACGTGGACGTTAATCTGTTTGAGAGCACCATCCGCATCCTGGGGGGCCTGCTCAGCACCTACCACCTGACCCAGGACAGCCTGTTCCTAGACAAAGCGAAAGACATCGGAGCCAGGCTGATGCCGGCCTTCAACACGCCGTCCAAAATCCCGTACTCTGACGTCAACATCGGCCGCGGCTCCGCCCACCCCCCACGCTGGACCTCCGACAGCACTGTCGCCGAGGTCACGAGCATCCAACTGGAGTTCCGGGAGCTGTCCCGCCTCACGCAGGATGACCGGTACCAGAAAGCGGTGGACAGCGTGATGAAGCACGTGCACAAGTTGGAGGGCAAGCATGACGGCCTGGTGCCCATGTTCATCAACACCAACAGCGGGCAGTTCACCCACTTGGGGGTGTACACGCTGGGCGCCCGTGCCGACAGCTACTACGAGTACCTGCTCAAGCAGTGGATCCAGGGAGGCAAGAAAGAGACTGAGTTGCTGGAGGACTACCTGCAGGCGGTTGAGGGGGTGAAGAAGAACCTGCTGAGAAAGTCCGAGCCAAGGAAGCTGACCTTCGTGGGGGAGCTGTCCCACAACCACTTCAGCCCCAAGATGGATCACCTGGTTTGCTTCCTGCCCGGCACACTGGCCCTAGGGGCGCACAATGGGCTGCCGGCAGAGCACATGGAGCTGGCCCAGCAGCTGGTGGAGACGTGCTATCAGATGTACGCACAGATCGAGACTGGCCTGAGCCCCGAGATTGTGCAGTTCAACCTCATGCCGCGCAACGGGAATGATGTGGAGGTCAAGcCCGCAGACAGACACAACCTCCTGCGCCCGGAGACTGTGGAGAGCCTCTTCTACCTGTACAGGTTCACCCGGGACAAGAAGTACCAGGATTGGGGCTGGGAGATCTTCCAGAGCTTCAACAAGTACACCAGGGTCCCCACAGGAGGATTCTCCTCGATCAGCAACGTGCGAAACCCAGAGAGCCCCGACCCACGGGACAAGATGGAGAGCTTCTTTCTGGGCGAGACCCTGAAGTACTTTTACCTCTTATTCTCCGACGACTTCGACCTGATCAGCCTGGACAAGTATGTGTTCAACACGGAGGCACACCCCCTGCCCATATGGCCTTCCTCGTaa

Function

GO: NA

KEGG:

id description
K23741 MAN1B, MNS3; endoplasmic reticulum Man9GlcNAc2 1,2-alpha-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77034 lncRNA downstream 13497 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 75493 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 235182 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 319504 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 367137 12430802 ~ 12451793 (-) True G61470
TU77095 lncRNA upstream 180400 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 509994 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 619980 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 751387 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 924062 13751084 ~ 13751298 (-) True G61872
AMCG00020195 mRNA downstream 5720 12810663 ~ 12813210 (-) True AMCG00020195
AMCG00020196 mRNA downstream 8402 12809474 ~ 12810528 (-) True AMCG00020196
AMCG00020193 mRNA downstream 28370 12782323 ~ 12790560 (-) True AMCG00020193
AMCG00020189 mRNA downstream 42514 12766665 ~ 12776416 (-) True AMCG00020189
AMCG00020190 mRNA downstream 52546 12762409 ~ 12766384 (-) True AMCG00020190
AMCG00020198 mRNA upstream 53642 12880664 ~ 12887861 (-) True AMCG00020198
AMCG00020197 mRNA upstream 62619 12889641 ~ 12898257 (-) True AMCG00020197
AMCG00020200 mRNA upstream 102763 12929785 ~ 13017709 (-) True AMCG00020200
AMCG00020201 mRNA upstream 202647 13029669 ~ 13033709 (-) True AMCG00020201
AMCG00020202 mRNA upstream 207067 13034089 ~ 13038065 (-) True AMCG00020202
TU76920 other downstream 308993 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 314253 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 170816 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 394578 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 768496 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 837065 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 977998 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile