RNA id: AMCG00020196


Basic Information

Item Value
RNA id AMCG00020196
length 582
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00020196
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12809474 ~ 12810528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTATACAGTGCAAAGAGCACTCCTGACAGCGTCTCTCCTCTTGTCTCCGGCTCAGGGGGTTTCTCTGAGGGGAAGACGCTCAACATACTGTACAGCTACCTGCCCCGCCTCCACCGCTGGGTCCAGAGCCGACCAATGGCCTTCTCCCGCTGTGATCACGCCATGGCAACAGCCAATGACACAATCTTCTGCATCGGAGGGCGGACTTTAAACACGGCGCAGCAGTGGGTGCACGTGAACGAGATGGAGAGCTACAGCCCTGGGGCTGATCAGTGGAGCACGATGAAGGTGTCCGCGCCACAGTGCTGCCAGCTCAGCCTGAGCGCCCTGGGCTCCCGGCTATACATCGTCGGTGGAGGCTCCCTGCGCTGCCTGAGCAAGACAGACGGCGTGTCCATCTACAACTCCGAGGGCAGGACGTGGGGGCGGGCGGCCAGTCTGCCCCTACCACTGGTGGACCACGCCTCCTGTGCGCTCACTGTGTCGCAGGATGTCCTGAATGGGCTGGAGCCACAAGAGAGCCCCAGCTCCCCCTCTTCCCCCAGGACGTCCTCCCTCAACCTGTTTGTGCTGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77034 lncRNA downstream 4041 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 66037 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 225726 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 310048 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 357681 12430802 ~ 12451793 (-) True G61470
TU77095 lncRNA upstream 196894 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 526488 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 636474 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 767881 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 940556 13751084 ~ 13751298 (-) True G61872
AMCG00020193 mRNA downstream 18914 12782323 ~ 12790560 (-) True AMCG00020193
AMCG00020189 mRNA downstream 33058 12766665 ~ 12776416 (-) True AMCG00020189
AMCG00020190 mRNA downstream 43090 12762409 ~ 12766384 (-) True AMCG00020190
AMCG00020188 mRNA downstream 50248 12753857 ~ 12759226 (-) True AMCG00020188
AMCG00020183 mRNA downstream 144962 12658313 ~ 12664512 (-) True AMCG00020183
AMCG00020195 mRNA upstream 135 12810663 ~ 12813210 (-) True AMCG00020195
AMCG00020194 mRNA upstream 8402 12818930 ~ 12827022 (-) True AMCG00020194
AMCG00020198 mRNA upstream 70136 12880664 ~ 12887861 (-) True AMCG00020198
AMCG00020197 mRNA upstream 79113 12889641 ~ 12898257 (-) True AMCG00020197
AMCG00020200 mRNA upstream 119257 12929785 ~ 13017709 (-) True AMCG00020200
TU76920 other downstream 299537 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 304797 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 187310 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 411072 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 784990 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 853559 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 994492 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile