RNA id: AMCG00020198



Basic Information


Item Value
RNA id AMCG00020198
length 345
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00020198
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12880664 ~ 12887861 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACCTGGCCCTGTGGAAGATGCTTCTCATCTCGTGTGTGCTCGGCGGATCTGAGGCTGGGCAGGACAGGGGGTTCCTTGCGGCAGATGACCTTTGTTATGGGCGACCCAGACGCCGCCAGGCAGCACTGCACCCTCCACCTCCCCGTCTGTGGGGGGGCCTCTCCCAAACCCCACCGTTCTCCGAAGAATGCCCAGCCTGAGCTGCAGACACACAGGCTGGAGGAGGACTGGAAAACCCACCGTGTGAGTATGGAGAGGAAGGAACTGAGGTTATACTGTTCGCAGGAACAACAGGGGGTGCGGTCAATGGGGGTCATGGAGACAGCCTGCATGCGTTTATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77034 lncRNA downstream 75231 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 137227 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 296916 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 381238 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 428871 12430802 ~ 12451793 (-) True G61470
TU77095 lncRNA upstream 119561 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 449155 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 559141 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 690548 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 863223 13751084 ~ 13751298 (-) True G61872
AMCG00020194 mRNA downstream 53642 12818930 ~ 12827022 (-) True AMCG00020194
AMCG00020195 mRNA downstream 67454 12810663 ~ 12813210 (-) True AMCG00020195
AMCG00020196 mRNA downstream 70136 12809474 ~ 12810528 (-) True AMCG00020196
AMCG00020193 mRNA downstream 90104 12782323 ~ 12790560 (-) True AMCG00020193
AMCG00020189 mRNA downstream 104248 12766665 ~ 12776416 (-) True AMCG00020189
AMCG00020197 mRNA upstream 1780 12889641 ~ 12898257 (-) True AMCG00020197
AMCG00020200 mRNA upstream 41924 12929785 ~ 13017709 (-) True AMCG00020200
AMCG00020201 mRNA upstream 141808 13029669 ~ 13033709 (-) True AMCG00020201
AMCG00020202 mRNA upstream 146228 13034089 ~ 13038065 (-) True AMCG00020202
AMCG00020199 mRNA upstream 187857 13075718 ~ 13079535 (-) True AMCG00020199
TU76920 other downstream 370727 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 375987 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 109977 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 333739 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 707657 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 776226 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 917159 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile