RNA id: AMCG00020201


Basic Information

Item Value
RNA id AMCG00020201
length 258
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00020201
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13029669 ~ 13033709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGCCATCATCGGCCTCGAGTTCTACATGGGCAAGTTCCACAAGACCTGCTTCAAGAACGAGACAGGTGAGAGGGCGGCGGATTTTCCCTGTGGAACCGAGCTGCCAGCGCGCCTCTGTCGCGACGACACGGTGTGCCGCGAGTACTGGATCGGGCCCAACTTCGGCATCACCAACTTCGACAACATCCTGTTTGCTGTGCTCACCGTCTTCCAGTGCATCACCATGGAGGGCTGGACCGACATCCTGTACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77095 lncRNA downstream 22003 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 224236 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 286232 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 445921 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 530243 12493801 ~ 12499426 (-) True G61477
TU77227 lncRNA upstream 303307 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 413293 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 544700 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 717375 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 755682 13789391 ~ 13792931 (-) True G61920
AMCG00020200 mRNA downstream 11960 12929785 ~ 13017709 (-) True AMCG00020200
AMCG00020197 mRNA downstream 131412 12889641 ~ 12898257 (-) True AMCG00020197
AMCG00020198 mRNA downstream 141808 12880664 ~ 12887861 (-) True AMCG00020198
AMCG00020194 mRNA downstream 202647 12818930 ~ 12827022 (-) True AMCG00020194
AMCG00020195 mRNA downstream 216459 12810663 ~ 12813210 (-) True AMCG00020195
AMCG00020202 mRNA upstream 380 13034089 ~ 13038065 (-) True AMCG00020202
AMCG00020199 mRNA upstream 42009 13075718 ~ 13079535 (-) True AMCG00020199
AMCG00020203 mRNA upstream 49920 13083629 ~ 13083952 (-) True AMCG00020203
AMCG00020204 mRNA upstream 58854 13092563 ~ 13110839 (-) True AMCG00020204
AMCG00020205 mRNA upstream 105463 13139172 ~ 13163646 (-) True AMCG00020205
TU77089 other downstream 31446 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 519732 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 524992 12490698 ~ 12504677 (-) False AMCG00020180
TU77151 other upstream 187891 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 561809 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 630378 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 771311 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 771311 13805020 ~ 13808333 (-) False AMCG00020252

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_05096677_05210034.mRNA True 6558 mRNA 0.51 46 CI01000339 5096677 ~ 5210034 (-)