RNA id: AMCG00020209


Basic Information

Item Value
RNA id AMCG00020209
length 2403
RNA type mRNA
GC content 0.55
exon number 13
gene id AMCG00020209
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13230008 ~ 13235396 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGCCTGCGGTACTAAAGCGGAACCGAAGTTCCCAAGCCTTCGTGCAGCTGGGGAAGAGAGACGGGCGGACGCGAGGAGGGGACTGTTTATCGCTGCGCACACCGGAACCGGAACTTGAGCTGACTCTTTGAATGGGATTATTTAGTTGAtttggggagagagggaaaacacagagggttgttttctgttttgtttgggaGTTTAATACTTTCAAAGTTGGGAAAGAGGGACGGTGGTGCAAGATGTTCGCTGGGTTACCCGAACTGGGCATCTCGAACGGCGAGGACCTGAAGGAAACCCTGACCAACTGCACCGAGCCTCTGAAAGCCATAGACCAGTTTCAGACGGAGAATGGGGTCCTGCTGCCGTCGCTGCAGTCCGCGCTGCCCTTCCTGGACCTGCACGGCACGCCGCGCCTGGAGTTCCACCAGTCCGTGTTCGACGAGCTGCGGGACAAGCTGATGGAGAGGGTGGCGACCATCGCCGAGGGCAAGGAGGAGGATCGgtacagtaagctggaggagctgctggagaaaaGCTTCCCACTGGTGAAGATGCCATCGATACAGCCAGTCGTCATGCAGGTGATGAAACACCTGCCTAAGgtcccAGAGAAGAAGCTGAAGCAGGTGATGTCTGACAAGGAGCTGTACAGCGTGTGTGCGGTGGAGGTGAAGAGGCAGATCTGGCAGGATAACCAGGCCCTGTTTGGGGACGAGGTGTCTCCCCTGCTCAAGCAGTACATCGTAGAGAAGGAGGCGGCGCTGTTCAGCAGCGACCTCTCCGTCCTGCACAACTTCTTCAGCCTCTCGCCCAAGACTCGCCGCCAGGGGGAGGTGGTGCTGAAGCTGACACAGATGATTGGGAAGAACGTGAAGCTGTACGACATGGTCCTGCAGTTCCTGCGCACACTCTTCCTGCGCACACGCAACGTCCACTACTGCACCCTGCGCGCCGAGTTGCTGATGTCTCTGCACGACCTGGACATCAGCGAGATCTGCTCGGTGGACCCCTGCCACAAGTTCACCTGGTGTCTGGACGCCTGTATCCGGGAGAAGTTTGTTGACGCCAAGAGGGCGAGAGAGCTACAGGGCTTCCTGGATGGAGTGAAGAAAGGACAGGAGCAAGTgctgggGGACCTGTCCATGATCCTGTGTGATCCCTTTGCCAGTAACACACTGGTGCTGAGCACTGTGAGGAacctgcaggagctgctgggCCAGGATGCGCTGCCCAGGgaCAGTCCAGACCTCTTGCTGCTGCTCAGGATGCTGTGTTTGGGGCAGGGCGCCTGGGACATGATTGACAGCCAGGTCTTCAAGGAGCCGCGCCTGGATCTGGAGGTGGTGACACGGTTCCTGCCAGCCATGCTGTCCGTGGTGGTGGATGACTACACCTTCACTGTGGAGCAGAAGCTGCCCAACGAGGAGAAGAGCAGCCTGACCTACCCCAGCACTCTACCTGAGGCCTTCAGCAAgcTGCTCCTGGAGAACCGTGTGGCGTGTGAGATGGGCCTGtactacacactgcacatcGCCAAGCTCAGGAACAAGAACGCTCTGCAGAGGCTGCTGCCAGCGCTGGtgGAGTCCCACAATGACATGTCTTTTGGGGACATCTTCCTGCACCTGCTGACGGGTCACCTGACGCTGCTGTCCGAGGAGTTCGGCACAGAGGATTTCTGCAGTGCCGTGTTCGACCGCTTCCTCCTTACCTCCTTCTCCAGTAAGGAGAACGTCCACAGACACGCCCTGCGCCTGCTGCTGCATCTCCACCGCAAAGTGCTGCCGTCCCGGCTGGAATCCCTCGTCAAGACCCTGGAGCCGCCCAAACAGAGCAGTGAACCAGTGAGGGAGCTGTACACCCAGCTGACCGAGAAACTTGATTCCCAGAAGAAGAGCCCCCCCACGGCTCCCGAGCCGCCCACTCTGGACCTGGGCCTGCACCCTGTCACCGTGCCCCCTGCTGTGCCCACCACCCCCCCGCTTTGAGGGAGCACggaaaggggggagagagagagagtgttaaaGAGGATTGATCTCACCACTGTCTAAGAATGGCAAATGGGTGTGGCTCATTCGATCACTACCTTAACACACCTTCAAATCTTGTCTGACTAATTATTATTCCCCAATCAAGGGTTTCCAGAGGCTTATCTAAGGgtcaatttaaatatgtataatatttttatttttttttatataaagaaaagcattgttGAAATTTGTGTTTGAGTTTTTTATCTCAGTATGTAGGGCAGTGTTGTCTGTAACTGGAGATGTGCGTGTGTGATGACAAACCTGTAATCTGTAAAtaaagtaatgtttatttttaataattgacaGGAGGGTGAACATTGCGCAGTGTGTTGTCATAGAGCCGATGTCAAGAGATTTAGGAG

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15180 COBRA1, NELFB; negative elongation factor B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77095 lncRNA downstream 222342 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 424575 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 486571 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 646260 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 730582 12493801 ~ 12499426 (-) True G61477
TU77227 lncRNA upstream 101620 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 211606 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 343013 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 515688 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 553995 13789391 ~ 13792931 (-) True G61920
AMCG00020212 mRNA downstream 5496 13216996 ~ 13224512 (-) False AMCG00020212
AMCG00020208 mRNA downstream 25019 13199720 ~ 13204989 (-) True AMCG00020208
AMCG00020210 mRNA downstream 49822 13170986 ~ 13180186 (-) True AMCG00020210
AMCG00020205 mRNA downstream 66362 13139172 ~ 13163646 (-) True AMCG00020205
AMCG00020204 mRNA downstream 119169 13092563 ~ 13110839 (-) True AMCG00020204
AMCG00020211 mRNA upstream 2519 13237915 ~ 13247628 (-) True AMCG00020211
AMCG00020207 mRNA upstream 20137 13255533 ~ 13273396 (-) True AMCG00020207
AMCG00020214 mRNA upstream 103157 13338553 ~ 13343605 (-) True AMCG00020214
AMCG00020215 mRNA upstream 108832 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020216 mRNA upstream 133252 13368648 ~ 13387997 (-) True AMCG00020216
TU77151 other downstream 5498 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 231785 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 720071 12500424 ~ 12509937 (-) False AMCG00020180
TU76916 other downstream 733268 12490698 ~ 12496740 (-) False AMCG00020180
TU77373 other upstream 360122 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 428691 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 569624 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 569624 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 894282 14129678 ~ 14131569 (-) True G62011

Expression Profile