RNA id: AMCG00020210


Basic Information

Item Value
RNA id AMCG00020210
length 2932
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00020210
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13170986 ~ 13180186 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAGACTGccctaataataatgaacaatgCATTCAGCTCAGGCTCTTATTAAGGCTACCAGAATGATAAagcatttcaatgtatttaataaaaataggGCATCTGGACTTGAAATGTGACGTATCCGCAAAGAATGGCTCTGTGAATAGGTAACTAGACCCAGAATAGTGATCTGTATGGTAATGTGTTGTATCTCGATGTGATAGTCCCTGAGTGGGTAAGATAATACCCTGTGGGTGAACCTGGGACTGCTAACCTGGGATCACATGTAACAGTGTAGGCCCTGTATGAATGAAGGTTTTATATAAAATTGGAGAAACTTGTTGATCTTGAAGACCTTCCTATCCTCTGACATTCAAAggttaaaaattaaacacaaagaaagGAGTGGTGAGCAACGTGCACAGCTGCTGTCCCACACACAGATGAAGTGTTTCATGGCTGGttataacatgacatttattcataataattgAGACGACAGatacaaaatgcttttaattattcttctcccttctctctccttttacAAGTAGACTCAAACAATCTATCTTACACAGAAATAGCAATCAATCAAGCTGatacaaaacagtacaaatataCCAATTAACATTAGAGTATATTTGTATACTATCACCATTCATATAACTAATATTATCattgttaaatgtataatttcaatTATTACAACTTTTATTGAAGTATTTACTTATTCTCGCTTGTTTTTGAGCGATTTCCAGATTTACATGGGCTAAAAGTAGATTGgctgtacatttatttgaaatgtgttaccTCTTTCACTCCCTCTCTGCGATGGACAGATTTAGAGACCTTCAAATCCCCAGGGCCAGAGCATTATAAACTAAACTCTTGGTTTACATACTTCGTAATACCAATAAATGTATTCAGCCTCCCACCTAAATCATTTgccaacaaatcaaaacaaaaatagtatttattacactttacTTGCACAGTCACTAAAATTGTCTGTAAGAGCTACTATTTTTGatattacaaaacacaagacaTCCATGTCCTACCAGCCCTGCCACGCTTCCACCACAGCGTGAACTTCCTTAGGGTTGACACAAATCAAAAGGCACTACTAGCCCCAAATAAGTACAATTCTAGGCCAAAACCagacagattatatttttatatatatatataatatagatatagatatagtgTAAGTGATGTGAGAGTGTGGATTATGtattcaacacacacacacacacatgaacaacAAACCCACACAGCCTCTTTAGTTAGTGGATCCATagcagtaaatacatttacacaattaacacaatttgatattgttttattctacCTCCCCCTGATATTTCAGTCTGCACCTGGGGAGTCCAATAACACTAGACTCACAGACTTCTGTGTCTTAATTGGAACCATGTGGCCCCAGTGCCAATGCTGCAGCGCCACATAACCCTAAACTCAGACTCAAACTCTTCTCTCTGACCCTGTCCCAGGCGTGCAATGGCACTGGTGTTGGACAGCTCCTGGCTCAACAAGCACCTGCGGGAATACTACATGAAGCTGCCACAGCACGGCAAAGTGCAGGTCACCTACATATGGATCGATAGTACAGGGGAGGGGCTGCGGAACAAGACCCGGACGCTGGACATTGAGCCCAAGAGCATCGAGGACATTCCAGAGTGGAACTTCGATGGATTCAGCACCTGCCAGACGGAGATCGCCAACAGAGACTTGTACCTGGTCCCGGTGCGCATGTTCAGAGATCCATTCACCCTCGACCGCAACAAGCTGGTGCTGTGTGAGTGGGAGTTCCAGGTGGGCCCGTGCGAAGGGATCGACATGGGGGACGAGCTCTGGATGGCGCGCTTCCTGCTGCACCGCGTGTGCGAGGATTTCGGGGTGATCGCCACCCTGGACCCCAAACCTGTCCCAGGCAACTGGAACGGAGCCGGCTGCCACATCAATGGTGAAGACAAGCTAGCGGCCGAACACGATGTGCTGGGGCGAGAAGCAGGTGCACCACTTTTGACGAAACTTCAGCAGAGgCACATAGAGAAGGCCATTGAGAAGCTGGGCCGACGCCACGCACACCACATTCGTTGCTACGACCCCCATGGTGGCCTTGACAATCAGCGACGCCTGACGGGCCACCACGAGACCTCCAGCATCCACAACTTCTCTGTGGGCGTGGCCAACCGTGGGGCCAGCATCCGAATCCCATTCCTGGTAGCCCAGGAGGGCCGGGGCTACTTCGAGGACAGGCGACCTGCGGCCAACTGCGATCCTTATGCTGTCACCTGTGCCATGGTCCGCACCTGCCTGCTGGACGCCccggacgaggaggaggagataGAGAAGAAACAGGTGGAGAAGAAAGACTGAgactggaggaagaggaggagggctTGTGGGGCAGAGGGACAGGAGACGGGGAGGGACAGtggagaggagaaagaggagaagaaagaatAAAGGGAACAGAGACTTTATAATCTGTTGTCTCTTCataatgtgtctctgtgtgcatgtgtgcaacACTTCTCTGTACTTGTTTTTACTGCTTCATGCAGAAGCATCTTGACAACCAGTGCACAAGGAACTGTTGAGAGTCATAGTTGTAATTGACTGGGATGCGCAGAACTCTGGATACGATGCTTTTCCCAGGGCTGCTCTACTTCAGTCCTCTCCCCTCAGTGTGAGAGACAGGAAGGTGGGGCATGTGGAAATGGcttgaatatttaataaaaacaaaacaaacaaaaaaacagataaataataataatgataaaggTCCTTGTCAAAATATTGACAAAGTCATAAAGTCAGTTATGAAGGAGAGGTTTGGGTATCCATTACAGCAGCTGTCCCTCCGGTGTGTGCCCTCCCAGAtccaggggcggactgggaccaacAAACGGCCCTGGAATTTGAC

Function

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77095 lncRNA downstream 163320 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 365553 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 427549 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 587238 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 671560 12493801 ~ 12499426 (-) True G61477
TU77227 lncRNA upstream 156830 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 266816 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 398223 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 570898 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 609205 13789391 ~ 13792931 (-) True G61920
AMCG00020205 mRNA downstream 7340 13139172 ~ 13163646 (-) True AMCG00020205
AMCG00020204 mRNA downstream 60147 13092563 ~ 13110839 (-) True AMCG00020204
AMCG00020203 mRNA downstream 87034 13083629 ~ 13083952 (-) True AMCG00020203
AMCG00020199 mRNA downstream 91451 13075718 ~ 13079535 (-) True AMCG00020199
AMCG00020202 mRNA downstream 132921 13034089 ~ 13038065 (-) True AMCG00020202
AMCG00020208 mRNA upstream 19534 13199720 ~ 13204989 (-) True AMCG00020208
AMCG00020212 mRNA upstream 36810 13216996 ~ 13224512 (-) False AMCG00020212
AMCG00020209 mRNA upstream 49822 13230008 ~ 13235396 (-) True AMCG00020209
AMCG00020211 mRNA upstream 57729 13237915 ~ 13247628 (-) True AMCG00020211
AMCG00020207 mRNA upstream 75347 13255533 ~ 13273396 (-) True AMCG00020207
TU77089 other downstream 172763 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 661049 12500424 ~ 12509937 (-) False AMCG00020180
TU76916 other downstream 674246 12490698 ~ 12496740 (-) False AMCG00020180
TU77151 other upstream 41414 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 415332 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 483901 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 624834 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 624834 13805020 ~ 13808333 (-) False AMCG00020252

Expression Profile