RNA id: TU77151


Basic Information

Item Value
RNA id TU77151
length 1844
RNA type TUCP
GC content 0.47
exon number 4
gene id AMCG00020212
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13216996 ~ 13224512 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGCAGTGGCGCGTCAGGTTGGGCACGGCGCTTCCCACATCCCCCGGGAGCCCAGCATCGCCCAGCATCGCCCAGCATCGCCCCTGCCCCCGGAGGAGCAGCACATCACACGGCACATCACACGGAGAGCGGGTGGAGGCACGATTGGCGGCGTGGCgagaaTATGGACCCGGCCGTGCTCATCTTCTTGCTCTACGTGATGATAGCCCATGAGCTGGTGGTCGGCTGGGTGCAGTACCGGAGGCAGGCGGCCAGGCCCCGCAAACAGCCCGGGCCGGTGTGGACCTCCGGcAGCGTGAGGGCAGTCTCTCGTGGGGTCCCCAGGGTCAGCAGCCAGCCTGTGAGGATGGAGAGAGCGAGGGACTGGAGGAAGAGTGGGAGGATTGTTAGGAAGGCctgagagacagatagagagagagatgtgcagGAGAAATCTGTTCAAGGAATTGGAATGTACAAAGAAAGAGCTGGAAGTGTGGACCCCTGTGGACCCCTGCAGGCCGGTCCTGTTCCTGGAGACGGCAGGGTGGTGGGTCCCCGCCTCTCACACCACTCCTGTCTGAGTGCACCGACGCCCTCGAATTGGTTCTTGTGCTTTGTGCGTTGTTGTCCAAGATGTCGTTCCCAGTACTCttatgtgcacacacacacaaacacacacacacacacacacacactcactcactcacacaaacGGTTCTGTCTGTGTTCTTGGACTCTGCAGAGTTTGAAAAAAATTCAGTTTGTTCATTCACTCATCCATCAATTCATTCacccatttatttatgtatttatttatacactctGGGTTGACAGAGAGACTGAAGGAGACTCTGCCACTGCAGTACACTAGTCAAGCTTTGCTGCTGCCTGGAGGCAAGACTGTGTGCTCGTCCGGCCCTGGGTTCGAAGGCCCTGGCCTGGGCTCAGACTGAGAGAGCAGCAGGGACACTGTGTGCTAGTGTGACCGGCCGGACAGCGCTTGTTTTCCTGAGCCTGTTACTGTAACATCATTCCCTCTGAACGTTCATATAAAACGTGaggcaagaacaaaaaaaatgaccCATTTCCCTAAAGTGTCCAGTAGAGATCAGAGTCTGGATGGGTCatcctgcatttaaaaattgtGCTTCTGCGTGGATGAATGAATACATGTCTGTATActgatttatatattcatttatttacttatttttaaatgtatgaattaatgtatgtatatggatttattgatgtatattgatttatttgtattttatttatttatgtatgtttgtatacatttttaaggacTTCTATTGCAGCCCGTCTCAGAGTTGTTAATGCTGTCTGGTATCCTCTGAACACACCCAAGCAGCGCTGCCTACAGGAGACAGTGGGGAATGACACCCAATATGACAATCATGGGGTTGGTTGGTGTGTTTGTAATGGCTATGGACTACAGATGATTGTGTTGCAATCCATTTTAACGTCCATATCTGGATAGAATGAGAAATTGCTGCAGAATTCCTGTTGCGAATGAACTGCCAGGCAGAGGCAGGTAttatgaatttgtttattttatatatgtgtgtgtatgtatttattaattcatgtattgAGTCTATCTtatgtgtacgtgtgtgtgtatttatttatgtatcataTGTATTTTAGGtggttgtttttatgtatctattGAGCATATTCTTGCTGTCATGGTATATAGACTGTGCACAGGcatctgcatatttataataaactCCCTGCTACAGAGACCACAGTGTGCTGTTCTTCTATGTCCTGTTCTGAATCCAGACAACAGGTACCTCttaaaaaacaatcagacaAGATCAggaatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77095 lncRNA downstream 213934 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 416167 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 478163 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 637852 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 722174 12493801 ~ 12499426 (-) True G61477
TU77227 lncRNA upstream 112506 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 222492 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 353899 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 526574 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 564881 13789391 ~ 13792931 (-) True G61920
AMCG00020208 mRNA downstream 16611 13199720 ~ 13204989 (-) True AMCG00020208
AMCG00020210 mRNA downstream 41414 13170986 ~ 13180186 (-) True AMCG00020210
AMCG00020205 mRNA downstream 57954 13139172 ~ 13163646 (-) True AMCG00020205
AMCG00020204 mRNA downstream 110761 13092563 ~ 13110839 (-) True AMCG00020204
AMCG00020203 mRNA downstream 137648 13083629 ~ 13083952 (-) True AMCG00020203
AMCG00020209 mRNA upstream 5498 13230008 ~ 13235396 (-) True AMCG00020209
AMCG00020211 mRNA upstream 13405 13237915 ~ 13247628 (-) True AMCG00020211
AMCG00020207 mRNA upstream 31023 13255533 ~ 13273396 (-) True AMCG00020207
AMCG00020214 mRNA upstream 114043 13338553 ~ 13343605 (-) True AMCG00020214
AMCG00020215 mRNA upstream 119718 13344228 ~ 13351669 (-) True AMCG00020215
TU77089 other downstream 223377 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 711663 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 716923 12490698 ~ 12504677 (-) False AMCG00020180
TU77373 other upstream 371008 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 439577 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 580510 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 580510 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 905168 14129678 ~ 14131569 (-) True G62011

Expression Profile