RNA id: AMCG00020214


Basic Information

Item Value
RNA id AMCG00020214
length 1434
RNA type mRNA
GC content 0.65
exon number 9
gene id AMCG00020214
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13338553 ~ 13343605 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCGCATTGTTTCTCCAGAGACGGACAGCGGCTTCGTGGGGTCGGAGAGCAGCCGTCTGACGCCTGCGGTGTGCAGCCCCCAACACCAGAGGGTGAGAGTGAGAGATGAAAAGCTAACACCCCCCCCAGCTGCCACTCAGCGCCCCACACCTTCCACCCGCCGCTCCACTCCCAAGGAGGCCGACGGGATCCCAGGGGTCTCGAGGTCAGAGGTCAATGCAGGTAGAAACGGGCCGGTCCTGCCCAGCCCTTCCCCTGCCACCTCCCCCCAGCACTGGGGCAGTAGCATCAACAGCGAGTTCGAACCCGAGTCCTGCGCCACCCACAGTGAGTCGGAAGGGGAGGGTCACAGTGTCCTGAGCGCCTTCGCCAGGCCAGCCAATAAGCAACATTATCAGCAGCACAGCCCGTCCCCCTCAGCAGCACATCCTAATGGCAACTTGCGGAGAGCTCAGAGTTCTGGATTGCTGCTGCCCAATAGACATGAGGCGATCCAGGCATTGCATGAGGAAGTGTCCAGACTGAGGCAGCGACTGGAGGGCAGTCTGCGCAGATCCTCCGGCAACACCCCAGCCCCCAGTATGGCGCCCCCTGTGGCCCGGGGTGAGCCACTGCCCCGACCCCGACGCAGCTCCACGCCTGTCCTGAGAAGGGGGGAGAAAGGAGGACGAGGATGGAGGAGAAGAGGTAGTGCAAGAGGACAGGGAGCCCCTCAGACCAACCCCGCGGCGAAGATCAGCGTCCCCAGTGATTCTGACCGTGTCCAGTCCCTGCCCCGACCCCAGTCCTCCAGACCTGTCCCAGCATCCTTTGCTGCACAGCGGAGCAGGAAGAGAGCAGGGGAGCACATCCAGGAAGCCGTGACGTTTCGGGGGCCCTATACAGGTgagggaggtgggGTGCCCCCCCATGGCCACACCCCCCCCCGCCACTGTCCCCTGTGCCGAGGGTCTGGAgtgcacagagagaggcaggcagaGCCAGGTGTTTGGACAGATCAAGACTCTGGCTCCACCCCCCGAGGCAGGCAGCCAATGGCATCTCCCCGGAAGGCGAAGAGGGGTGTGTTCGTGACGGCCCCGCCCCCTCCCACACTGGGTAGTGTGCCTGTGATCCAGTGTGTGCCCATGTGCCCACAGCCTGTCCTGTATTACTCCACCCCCCTCTCCAATGCCCCTTCCTCCTACGCGGAGCCCCGTCTCTACCTCTCGGTGGGTGGGGtctcaggggtcaggggtcagagaGCGCGGGGGGCCAGGCAGGTGCGTTCCCTGAGCCTTGAGGAGGGCGTCGCTGCGGACACGCTCAGCCGCTCTCTGAGCCGCGCCATCGAGGCAGCGTGCAGCATGCGGGAGGCGTCCCGGCGCATGGCGACCTCGCTGAGCACTGGGCTGCACCAGCAGGGGGCGCTACGGCAGTCCTGCCACTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77227 lncRNA downstream 452 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 330887 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 533120 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 595116 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 754805 12578671 ~ 12583748 (-) True G61488
TU77271 lncRNA upstream 103397 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 234804 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 407479 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 445786 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 468366 13811971 ~ 13813003 (-) False AMCG00020256
AMCG00020207 mRNA downstream 65157 13255533 ~ 13273396 (-) True AMCG00020207
AMCG00020211 mRNA downstream 90925 13237915 ~ 13247628 (-) True AMCG00020211
AMCG00020209 mRNA downstream 103157 13230008 ~ 13235396 (-) True AMCG00020209
AMCG00020212 mRNA downstream 114041 13216996 ~ 13224512 (-) False AMCG00020212
AMCG00020208 mRNA downstream 133564 13199720 ~ 13204989 (-) True AMCG00020208
AMCG00020215 mRNA upstream 623 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020216 mRNA upstream 25043 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020221 mRNA upstream 56509 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020219 mRNA upstream 65100 13408705 ~ 13427411 (-) True AMCG00020219
AMCG00020220 mRNA upstream 126205 13469810 ~ 13470856 (-) True AMCG00020220
TU77151 other downstream 114043 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 340330 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 828616 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 841813 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 845988 12490698 ~ 12492565 (-) False AMCG00020180
TU77373 other upstream 251913 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 320482 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 461415 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 461415 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 786073 14129678 ~ 14131569 (-) True G62011

Expression Profile