RNA id: AMCG00020215


Basic Information

Item Value
RNA id AMCG00020215
length 2781
RNA type mRNA
GC content 0.64
exon number 11
gene id AMCG00020215
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13344228 ~ 13351669 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGGGGGTCAGCGGAGGTTGGCGGCAGACTCGGGGCGCCCCTCGTCAGCAAGCTCTGGGGGGTCGGGGGCGAgctgggaggtggaggggggcGAGGACCTGGGGGAAGTagaggggggcgggggaggggaCGACGATTTCGATTTCCACAGCCAGATGGATGAGAACGGTATCATCGGGCTGGACGACTTCACAGAAGAGCTCCTGGAGGGCAGGAGAGGGCCCCTCTCAGACACGGGGACCCCCGATCCCGAAGAGGGCCCCCGCCCAGCATTGGCCAGCCCCGGGTTCGAGTTGGAGGAGGACCTGTTCGAGGACCTGAGCTACAACCTCAGTGAGCTGCAGGACTCGGAGCCTCTGCTGCTGTCCCAGTCCCCCGGGCAGGAGGCTGGCCTATCCCCCTCgctctccccttccctctcccttGATGGTCCACACAGGCTGGGAGAAAGCGCAGGGAGTTTTGGGGCAGAGCAGttgggagaggaggaagaggaggaggagggtgagcCCTGGCTTGTCCACAGACCGCAGCAGTGGCGTCCAGATAGAGACGCACAGCTGGATATGACggaggatgagagagagggggaggggtctGCGGGGGAGGACAGccaaagaggaggaggagcctcGAAGTACTGGGAGGAGCCTGTGACGAGGGGTCCAGAAGACTTCGGGGACATATCTGACATTCCAATGGCCAGGTTTCTGACTGGTTTTGGAGAGAAAGATGAAGAGGGAGAGCCAGCGACAGCATACAGagtcacaaaacacaacagtgttGGTGTCTCGGGGGACAGTGAAACAGGGCCTGAGCAGGATGAAGAGGGGCAGACACCGTTCAGCGGAACCCTCCTCTCTCGGGCTCAGCCCCTGCTGCTCCCAGCGCCAAGAACCCTGCACCAGCAGAACCGCCAAATCGGACCTTCCACAACCCACCTTGACCGGAGCTTCCTGTGCCGGCTTTCCAGAGAGGACCTGGATGCCCCGGGACCCGACCTCCAGGCCGAGCCCTTCCCCGATTCTCCTTCCTCTGAGAGCAGCAGCGCCGATGAGTTCGGAGGGAATAGCAgcccctctctcctccaccaCCGCCTCTCCTGGGACAGCGGGCGCCAGgcgagggagggagaagaggaagcAGGTGAAGACTGGCAGGGGGAGCTCGAAGATGAAGTTGGAGATGAAGCCCCTTTCAGGACCGCTTGGACAATGTCTGTGCCCCCACCCTCCGCGCCAAgacagcccccctccccctcggccAGTCCCCCAAAGCATGGACCCCCCAAACGCCATCCTCTGCCTCCATCCCCCTCTGCCTCCCAGTCCAAGACGAGGATTTCAGGGTCGCCCCTCAGAGCCACACAGACAGGAGACACCAGAGGACGCAGGATTCCGAGGGGGGTCTCCCCGAAAGTAACCCCAGGAGGCTCCAGCACCCCTGTCACTGACACCCCCAGGTATGGCCGGGGGCAGCTCAATTACCCCCTGCCCGATTTCTCCAAGGTGGAGCCCAGGGTGCGATTCCCCAAGGATGGGTACCGCCCCCCCCGTGGTAGGGGCTCGCCCCGGTGCAGCACAGGGCTCCCTGTCCCCCCCCTGGTCTTCAAGTCCCCGGCCGAGATCGTCAGGGAGGTCCTGCTGAGCAGCACGGAGGCAGCGCCCCGCCCAGCGCCCTCCGCTGGCCGCCGACCTCCGACCCCCAATGCCACGCTGCCGGAGGAGTTCAAGTCCCCCCAACAGGCCACTGCTCTGGTGCACCAGCTCCAGGAGGACTACAACAGACTGTTGACCAAATATGCAGAAGCTGAGAATACCATCGACCGCCTCAGACTGGGAGCCAAGGTCATGACCCTGTCGTTCCCCCAGGCCCAGAAAGCGCAGATCGGCCCGTCCGCTGACTCCGCTCCCCAGGCTCGGCACGGCACAGAACTCTCTCCTGACGTCCCCCCGGCGGCAGCGGCGGCCTCCACCCCCAGCCCCAGCATGGGCCCTCAAGTAGGAGAGAGGCTGACCAAGGCTCTCGCCCGGCAGGCTGAGCGGTTCCGGCTTCAGattgAGTCCTTTGAAGACCTGCTCAGGTCAGGAAGGCTGAAGCCCACTGAGCAGATGAAGGGCCTGTCCAGCCTGCAGCAGACCCAGGAGGCTCTGGAGCGGGGCTACCTGCAGGCCAGGGAGGAACAGCGCCACCTGGTGCAGCAGGGTGGTGATGTGGGACACTTTGACCCTGACAGggaggtAGAGGGTCAGATATTCCAGCTGGGGATGCGTCTGGAAGACCTGAAGGAACAGGTGGACCAGGTCGTGCGGTATCCACTCACCTCCGGCCCCCCCGTGGCCCCACCATCATCCCCTCCCGCCCCAGACCCCCTCACCGGGCCCCTCAGCACTAGTGCCCCCACGCCCCACCCCGAGaGCCCAGTGTCCCCGGTGGGAGGGCGTGACGTTGGCGTGTCTTTGGAGGTCAGCTCAGTGAGCGGGGAGAGTgatggggaggagggggcagaGACCCTGCCATCTGCCCTACCCCCCCCACTGCGACACAAACACCAGCGCGTGGAGGGAGAGTACAGCAACCTGCTGGACCATTACCAGAGCTTCAGGGAGCTGCCTGGGCTTTTGAACCTGCACCAGGGAGAAGGGCTTACAGAATCTGGACATGGAGTTTCAAGGACAGCTGGGATACCAGGAGAAgggagcaggaggagagagagaggggaggagaggaggaggaagactgAGGGGGAAGAGGAGAGCACTGCAGCTCTGGAGTga

Function

GO: NA

KEGG:

id description
K21404 AKNA; AT-hook-containing transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77227 lncRNA downstream 6127 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 336562 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 538795 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 600791 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 760480 12578671 ~ 12583748 (-) True G61488
TU77271 lncRNA upstream 95333 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 226740 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 399415 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 437722 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 460302 13811971 ~ 13813003 (-) False AMCG00020256
AMCG00020214 mRNA downstream 623 13338553 ~ 13343605 (-) True AMCG00020214
AMCG00020207 mRNA downstream 70832 13255533 ~ 13273396 (-) True AMCG00020207
AMCG00020211 mRNA downstream 96600 13237915 ~ 13247628 (-) True AMCG00020211
AMCG00020209 mRNA downstream 108832 13230008 ~ 13235396 (-) True AMCG00020209
AMCG00020212 mRNA downstream 119716 13216996 ~ 13224512 (-) False AMCG00020212
AMCG00020216 mRNA upstream 16979 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020221 mRNA upstream 48445 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020219 mRNA upstream 57036 13408705 ~ 13427411 (-) True AMCG00020219
AMCG00020220 mRNA upstream 118141 13469810 ~ 13470856 (-) True AMCG00020220
AMCG00020224 mRNA upstream 234711 13586380 ~ 13588928 (-) True AMCG00020224
TU77151 other downstream 119718 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 346005 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 834291 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 847488 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 851663 12490698 ~ 12492565 (-) False AMCG00020180
TU77373 other upstream 243849 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 312418 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 453351 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 453351 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 778009 14129678 ~ 14131569 (-) True G62011

Expression Profile