RNA id: AMCG00020217


Basic Information

Item Value
RNA id AMCG00020217
length 1308
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00020217
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13456679 ~ 13461481 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGAGCGCTCGGCCAGCCCGGTGTCGGACTGTGGTACTCGGCACCACGACCCCAACACACCGATGTACCTCCAGGACGGATTCTCGGCGGCGCCTCACCAGTACACACACCCTGCGCTGCAGGATCCGCAGCTGAGGTTAAACAAGAcccccgccgccgccgccgctccCTCGTATACCGGCATCGCCCCTCCGCCGCAACACTTCTTCCAGTTCGACTACCGGCACGCCGAGTTCCCGGGCAGCGACGCGGGCGCGACTCGGCAGTGGTGCGCGTTTCCCGCTGCGGAGATCACGGGCCGGGTCCCTGGGGCCACGGCCACCTCCGCTCAGCCGGACAGCCCGAGCCCGCCGATCGCCGAAACCCGTGAACACGTTCAAATAGCCAACATCAAAGCCGAGAGAGAGGTGGACAGTTATTCCCCGGACCCTAAAGCCACCCAGGCGTCCGTACAGCCACTCCACGCCGCCGCCTCCTCCAGTATGGCCCACGGACTTTATTACTCTGCCCCCTGGAGTCCCTCTTTCTGGCCGGCCCTGACGCACAGTTCTGCCCAGGTCCAAGTCCCGACCCAGGCTGCTGCAGctcccccaccctcctcctcctcctcctcttcttcttccccctctgtctctccatcaCCCACGGGCCACAGTTACCCTGCGTCGGGGTTTTACATGGCGACGGGGACCCCAGGACTCAACGCCCCGTTACTGCAAAACTTGAACCCGAGGAGTTGCGGCTCCTCCAGTGGCGCTGGTAGTGACTCGGAGGAAGAGATGTTCAGCCAGACGACGATCTGCCGGTTCGAGGCGCTGCAGCTGAGCTTCAAGAACATGTGCAAGCTGAAGCCGCTACTGCAGAGGTGGCTGAACGAAGCAGAGACGTCAGACAACCCCCAGGATATGTACAAGATTGAGCGAGTGTTCCTGGACGCtcggaagaggaagaggaggacgagTCTGGAGGTGAACGTGCGCATCGCTCTGGAGTCCTTCTTTGGCAAGTGTCCCAAACCCAACATGCAGGACATCACTCGCATCTCGGACCAGCTGGGGCTGGAGAGAGACAAGGATAAGAGACTGGCTCTACCCTttgaggaggagggggtggcaGAGGGGCAGTACTTCGACCAGGGTCCCCCCCAGCACATGAGCACTGGGCCCCTCCACCCCGGTCAGGCATACCCCCCCGGAGTCGGTCTGCCCGCGCCCCCTCACCTCTACATGCCCTCCTTCCACAGAGCTGACGTGTACAAGCAAGCCCTGCACCCTGGGCTGACTGTGGGGCACCTGTCAGGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77201 lncRNA upstream 105145 13351248 ~ 13351534 (+) True G61676
TU77199 lncRNA upstream 107533 13348855 ~ 13349146 (+) True G61674
TU77197 lncRNA upstream 112640 13343757 ~ 13344039 (+) True G61672
TU77196 lncRNA upstream 113298 13343143 ~ 13343381 (+) True G61671
TU77195 lncRNA upstream 113666 13342680 ~ 13343013 (+) True G61670
TU77328 lncRNA downstream 134033 13595514 ~ 13596726 (+) True G61774
TU77411 lncRNA downstream 247354 13708835 ~ 13709496 (+) True G61841
TU77450 lncRNA downstream 289606 13751087 ~ 13751363 (+) True G61871
TU77473 lncRNA downstream 328281 13789762 ~ 13792944 (+) True AMCG00020245
TU77505 lncRNA downstream 415830 13877311 ~ 13930740 (+) True G61904
AMCG00020218 mRNA upstream 4888 13436742 ~ 13451791 (+) True AMCG00020218
AMCG00020213 mRNA upstream 126502 13303410 ~ 13330177 (+) True AMCG00020213
AMCG00020206 mRNA upstream 201388 13248757 ~ 13255291 (+) True AMCG00020206
AMCG00020192 mRNA upstream 641347 12802058 ~ 12815332 (+) True AMCG00020192
AMCG00020191 mRNA upstream 721466 12734875 ~ 12735213 (+) True AMCG00020191
AMCG00020225 mRNA downstream 52073 13513554 ~ 13516767 (+) True AMCG00020225
AMCG00020223 mRNA downstream 83930 13545411 ~ 13579175 (+) True AMCG00020223
AMCG00020222 mRNA downstream 121800 13583281 ~ 13585950 (+) True AMCG00020222
AMCG00020226 mRNA downstream 130615 13592096 ~ 13595451 (+) True AMCG00020226
AMCG00020228 mRNA downstream 136488 13597969 ~ 13613378 (+) True AMCG00020228
TU77200 other upstream 105967 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 836862 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 918927 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 918927 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 3668627 9784117 ~ 9788052 (+) True AMCG00020105
TU77491 other downstream 371689 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 401996 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 486945 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 1006319 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 3352893 16814374 ~ 16815857 (+) True G62632

Expression Profile