RNA id: AMCG00020218



Basic Information


Item Value
RNA id AMCG00020218
length 909
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00020218
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13436742 ~ 13451791 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGTCTGGACTGCGCCCTGAAGCGACGAGAGCTTTGTCCACCAGGCTCCACACACTGTGGCCCCTGCATCGCCCCGTTGGTTGAGGACGAGCTCAAGAACTGCGTCAGGAAGAAGCATTCCCAAACTGAGGGTATCTGTGTCAGCTGGGTCTCTGCCCCCCTCTTCACCTCAGgtaagGTTAGCTCTATGCCTGAGCTGGACGAGGAGATAGACTTCCTGTCCTCCATCATCGCCAAAGAACAGGAATCAGTTGGCGCCTCCTCTGCTGTTTCTGGGCCCCCGCCACAGTCTGACCCTAAGAAGAATGACCCAACAGGGCCAGTCCGCAGTCACACCCCAATGCCAACGAGACGCCCCGgatccaccaccaccaccaccactgtgCCGCCCCCCACCAAATCGGCAGTGCGCAGCGGCCCTGTGACCACGCCTTACGCCCGCAACGACACCCTACTCATCAGTGCTAATGATTGCGGTGTGTATACTGGTGGGGACAGCTGCTCTGATAGTGGCTGGGATATGCTGGGTCAGAAGGTGGATTACCCTGCGTTTGGAGTGATGGGGCCCAACTCCTTCGACAGCACCTCGGTGAGTAGGGCCATGATGAGAACAgcgagtCCTGGAGATAAGAAGCTGGCTCACAGTGCCCAGATGTACCACTATCAGCACCAGAAGCAGCAGATGTTGTCTATGGAGAAGCACACAGACGAGCCGAAGGTCCCTGACTCCGGGACGACTACAGATGAGGAGAACGAGGATGGAGACTTCACTGTGTACGAGTGTCCGGGGCTGGCGCCGGCAGTGCCAATGGGAACCCTGACCCTCGCTAGCTGCTGCCACCAGATGCTCAGCTGTGTTTGGCGATACGTGTGCTGGGCATCACCCAGGCCCTCCTCCTTGATCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77201 lncRNA upstream 85208 13351248 ~ 13351534 (+) True G61676
TU77199 lncRNA upstream 87596 13348855 ~ 13349146 (+) True G61674
TU77197 lncRNA upstream 92703 13343757 ~ 13344039 (+) True G61672
TU77196 lncRNA upstream 93361 13343143 ~ 13343381 (+) True G61671
TU77195 lncRNA upstream 93729 13342680 ~ 13343013 (+) True G61670
TU77328 lncRNA downstream 143723 13595514 ~ 13596726 (+) True G61774
TU77411 lncRNA downstream 257044 13708835 ~ 13709496 (+) True G61841
TU77450 lncRNA downstream 299296 13751087 ~ 13751363 (+) True G61871
TU77473 lncRNA downstream 337971 13789762 ~ 13792944 (+) True AMCG00020245
TU77505 lncRNA downstream 425520 13877311 ~ 13930740 (+) True G61904
AMCG00020213 mRNA upstream 106565 13303410 ~ 13330177 (+) True AMCG00020213
AMCG00020206 mRNA upstream 181451 13248757 ~ 13255291 (+) True AMCG00020206
AMCG00020192 mRNA upstream 621410 12802058 ~ 12815332 (+) True AMCG00020192
AMCG00020191 mRNA upstream 701529 12734875 ~ 12735213 (+) True AMCG00020191
AMCG00020187 mRNA upstream 746397 12664908 ~ 12690345 (+) True AMCG00020187
AMCG00020217 mRNA downstream 4888 13456679 ~ 13461481 (+) True AMCG00020217
AMCG00020225 mRNA downstream 61763 13513554 ~ 13516767 (+) True AMCG00020225
AMCG00020223 mRNA downstream 93620 13545411 ~ 13579175 (+) True AMCG00020223
AMCG00020222 mRNA downstream 131490 13583281 ~ 13585950 (+) True AMCG00020222
AMCG00020226 mRNA downstream 140305 13592096 ~ 13595451 (+) True AMCG00020226
TU77200 other upstream 86030 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 816925 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 898990 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 898990 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 3648690 9784117 ~ 9788052 (+) True AMCG00020105
TU77491 other downstream 381379 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 411686 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 496635 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 1016009 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 3362583 16814374 ~ 16815857 (+) True G62632

Expression Profile