RNA id: AMCG00020219


Basic Information

Item Value
RNA id AMCG00020219
length 2888
RNA type mRNA
GC content 0.56
exon number 18
gene id AMCG00020219
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13408705 ~ 13427411 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATTCATTAGACTACCAGCAAGTCCAGAGTACGGAGCGAGTATGGTGCGACTACAGCGCAGGGACGAGGCAGCGTCGCCGCCCCGGAGTCAGCAGTCACAGTGGCTCCAAGAGGAGTGTGTTCTCATTCTGTACCATTTCACCTTGACCCTCGCCCACCCCACCGCGTCCTCGGAGATTCAATACGGCTTAGCACCCAGCCCCGCCAGGGCGCTGCTGCTGGCGGCGCTTCGGTGCGCAGTGTGCGGAGGATGCGGAGCTGCGCGGTGCGTGGCGGACAGGCAGGACTGGGCAGGGGAGCTGGCGAGCTCCCggctggagagagaaagagggaggggggctGGGGGCACGTACAGTGCTGTCGTCATGACGCTCGCTAAACCGGTTATCTCAGCCGAGCAGACGACTCTCTGCCTGTCTGAAGCTCACCTGTACGCACCTGAACAGCACAGAGACGCTCTCTACAGCACAGAGGAACCATCTCTACAGCACAGAGACGCTCTCTACAGCACAGAGGAACCATCTCTACAGCACAGAGACGCTCTCTACAGCACAGAGGAACCATCTCTACACAGTACCATGCTGTACACGGAGCTGATCAGGCTGTGGAGTGAGGCAGTGGGTGCTGTTGACCGAAGGGACTGGGAGGCGGCACTGACCGCACTGGGGCAGATTTCTGAGCCCACGGCCCGCACGCTATTCACAACCGCCTCAATCCTGCTCACACTGGGCCGCCTGGAGCTCAccatcaaggctCTGGATCAGACTATTGCGAAGGATGAGCGTCTCGCTGTGGGCTTTTTCCAGAGGGCAGCTGTGCACATGCTGGCTGACAGgctggATGAGGCCCTGGGAGACTGCGCTTTGGCACAGAAGCACATGAGAGGAAACTCTGTCATTGACTACAGGCAGCTGGGGCTGCGCTACAAACTGTACAGCTGGcagaggCTTGAGGTGCTGAAGCCCCTCTTGGTCCCAGAGGTGATTCCCAATGATGACTTCGGAGGGTTCGAGCCTCTGAGGCTGCAGAAGCCGGGATACTACGAGCCCAAGGCCGCAGCACATGAGTCCCGATACATGCGTGTGCGGTCCAGGTACACAGCGCGGGGGCCAGGAGAGCTGCAGGTGCTGCGCGGGGAGCCCGTGTTCATGCTGGATGACAGCGGGAGTGATGGACAGGCCACCGTTATCTACGATGGACAGAAAGTCCAGCTACCCCTCTCTGTCCTGGAACCAATAGATGTCAACAAGCCCCAGAAGAAGGATTTGAAGAGTGTGCCCAAAGGAATCCCGCTGCCTCCAGACCTGAAGCCCCCCATGCGCCCGCAGTCCCGTGCCAGCCAGGCTGCCCCCCCACTGGATGCTCCAGGCAATCAGTTTCCCCCACCTGTCTCCCCATCCACTCCTGTCCCACCCGCCCTCACTAGCCCCTCTAGCCCTCTTccagccccccagccccactCAGGAGATGAAGTGCTTGAACAATCAGAGGCACAGAGGACAGCCAGAAAGAAGCTGGCAGGGGGCAGTGTGGAGGAGTCTGAGGTGGGCGACTCTGTGGTGGTTAAGGTCCACTACAGGTTCACCGTGGCTCTGAGTGTCCCCGTGAAGACACCGTACAGCAAACTGCGGGAGCGAATCGCACACAAACTGGGCCAGCCGTCCAATCAGCTCCGGCTCAGacacagagagaggggttcTCAGGTGATGAAGCCCCTCAGTGGGGTGGAGTtgcaggagctgctggagggGGCGGAGAATGGCAGAGCCACACTGTGGTGCCAgGACCCCCTGCTGGGCCGGCCCATCCTGTATCAGGTGGTGGCTCTGTACGACTATACTGCACAGGGGCCTGAGGACCTGGAGTTCAATGAGGGAGACACCATTGACATCTTGTCTGAAGTGAACGAGGAGTGGATGGAGGGGCACGTGGCTGGCAGCATTGGAATCTTCCCCAGGTGTTTCGTGTACCGCGAGGCTGATTCCTCCGTAGGCAGCATCAGCAGCCATGATGCCCAGACCATGTGACCAAGATGGACTGTAGCTCTCATCCCTGCCATACACACTGACCACACTTTtacaaccaccaccaccccatCTGGAGTGTTCTTTAACCCCACACCCTCCCTCCACTCCCCCAGACGCCCGGATTTCAATCTAGCTAATCTGGTTAATTTAATCACTTGATCCATTATTTTGAAGTAATTGGGGATACAAATCAGGAGCCACAGATTGTCATGGTGATTGTGTCATGggtgttgttgttggttgtGGTGAAGGTGGGGGTGAGTGTGCCTGTGGGCAGGTGGGGGAGGCATCCTGGTGCCAGGTAACCCAGTGTTCGCTGGGCAGCACTTGCACAGAATGTCAGTAACATTCCACGAGAGATGGGCAACATCACTTCCTCtaaggggtgtgtgtgtatgggggcgAATGCTGGTATTCCTCCGGGCTGCACCGTGACATTTAGTGGTGGTATTTCCAACAGTCCCTTATCTATGAAAGCTGTCTTGCTCTCTGCGGAGCCCTCTTCACCTCAAACCATCGCTTGGGTACTAACCTCGGTTGTTATTATAGAGAAGAACCTGTCAAAGCCAGATTGATAATGCAGGCAGTCCTACTGCTCGTTGCTCTGACGGTCACTTTGTATCTGTATTCTGTAGTGAGCTGATCTTTACTGACATCAGATTATCCATCCTAGCAGTGGCATTCTTCTCTATTGTGATAggtatagaaatatatatgtatatatttatatatacgcACCAGGTTCTGACTTACTGACTGAACCCCACTGCCTGAACCTAAACAGGCATTTTAGAACTATCAAAAATGATTCAGTAGAAGATATTGTAttgagaaagaaataaacatggCAAAAACGA

Function

GO:

id name namespace
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG:

id description
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77227 lncRNA downstream 70604 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 401039 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 603272 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 665268 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 824957 12578671 ~ 12583748 (-) True G61488
TU77271 lncRNA upstream 19591 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 150998 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 323673 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 361980 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 384560 13811971 ~ 13813003 (-) False AMCG00020256
AMCG00020221 mRNA downstream 5465 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020216 mRNA downstream 20708 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020215 mRNA downstream 57036 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020214 mRNA downstream 65100 13338553 ~ 13343605 (-) True AMCG00020214
AMCG00020207 mRNA downstream 135309 13255533 ~ 13273396 (-) True AMCG00020207
AMCG00020220 mRNA upstream 42399 13469810 ~ 13470856 (-) True AMCG00020220
AMCG00020224 mRNA upstream 158969 13586380 ~ 13588928 (-) True AMCG00020224
AMCG00020230 mRNA upstream 168289 13595700 ~ 13596107 (-) False AMCG00020230
AMCG00020231 mRNA upstream 223178 13650589 ~ 13663220 (-) True AMCG00020231
AMCG00020229 mRNA upstream 236665 13664076 ~ 13665592 (-) True AMCG00020229
TU77151 other downstream 184195 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 410482 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 898768 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 911965 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 916140 12490698 ~ 12492565 (-) False AMCG00020180
TU77373 other upstream 168107 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 236676 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 377609 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 377609 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 702267 14129678 ~ 14131569 (-) True G62011

Expression Profile