RNA id: AMCG00020220


Basic Information

Item Value
RNA id AMCG00020220
length 1047
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00020220
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13469810 ~ 13470856 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCAAGGTGCTGCTGCCAGCACCACGCCTGCAGCTCATGCTCCTACCtctgctccttgtgctcctgcTGCTGGTCTGGTACAACCCGCTGCTGCTGCCCCAGGGCAGAGGAGCCCCCCCCATCCACAACATCACTGTTCTGGTCTGGAACTGGCCATTTGGCCATGCCTTCCCCCTGCACAGTGACATGTGTGAAACAAATGACGGCCTCCCCACCTGCCATCTCACTGACAACCGCTCCCTCTATGAGCAGGCAGACGCGGTCCTCTTCCACCACCGAGAGATCAACAGTCGGGCCGTGGCTCTGCCTACTGACCATCCCCGGCCTCCTGGGCAGAAGTGGGTCTGGATGTCAATGGAGTCACCGACCCATAACTACAACCTGACCTGGCTCAACGGCCTCTTCAACTGGACCCTGACCTACCAGCGGAATGCAGACATCTATGTTCCCTATGGGAAGCGGGTGCCCAGGAGGGGGAAGAGCAGCAGCAATTACACCATCCCCCGGAAGCGCTCAGACAAGCTGGCCTGCTGGGTGGTGAGCAACTACAAGGAGAGACACAGGAGGAGCAAGGTTGCCAGGGAGCTAAGCAAGCTGATTCCCCTGGATATATACGGGCGCTCTGTGCACAAGCCGCTGAAGTCCGACCAGCTACTGAGCACCATCTCACAGTATCGTTTCTACCTGGCTTTCGAGAACTCGGAGCATCGCGACTACATCACTGAGAAGCTGTGGCGCAACTCCTACGAGGCAGGTGCAGTGCCTGTGGTGCTGGGTGCCCCCCGCTCCGACTATGAGGCCTTGGCCCCCCCCGACTCCTTCATCCACGTGGACGACTTCCCTTCTGTCCGGGAGCTTGCTGAATTCCTGCGCACTGTGGCCACCAACGAGACACGATACCAGCAGTACTTCCAGTGGCACCGCGAGTGGGAGGTACAGGAGTACAGGGGCTGGTTAAATAGGATCTGTCTTGCTTGCATCCAGTACCACACTGTGTCCCCCAGGAAGGTGTACCATGATCTGCAGGGCTGGTCTGTCAGGTGA

Function

GO: NA

KEGG:

id description
K07635 FUT7; galactoside alpha-1,3-fucosyltransferase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77271 lncRNA downstream 19748 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 131709 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 462144 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 664377 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 726373 12719367 ~ 12743437 (-) True G61550
TU77364 lncRNA upstream 107553 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 280228 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 318535 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 341115 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 341115 13811971 ~ 13813003 (-) False AMCG00020256
AMCG00020219 mRNA downstream 42399 13408705 ~ 13427411 (-) True AMCG00020219
AMCG00020221 mRNA downstream 66570 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020216 mRNA downstream 81813 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020215 mRNA downstream 118141 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020214 mRNA downstream 126205 13338553 ~ 13343605 (-) True AMCG00020214
AMCG00020224 mRNA upstream 115524 13586380 ~ 13588928 (-) True AMCG00020224
AMCG00020230 mRNA upstream 124844 13595700 ~ 13596107 (-) False AMCG00020230
AMCG00020231 mRNA upstream 179733 13650589 ~ 13663220 (-) True AMCG00020231
AMCG00020229 mRNA upstream 193220 13664076 ~ 13665592 (-) True AMCG00020229
AMCG00020237 mRNA upstream 201439 13672295 ~ 13684406 (-) True AMCG00020237
TU77151 other downstream 245300 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 471587 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 959873 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 973070 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 977245 12490698 ~ 12492565 (-) False AMCG00020180
TU77373 other upstream 124662 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 193231 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 334164 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 334164 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 658822 14129678 ~ 14131569 (-) True G62011

Expression Profile