RNA id: AMCG00020221


Basic Information

Item Value
RNA id AMCG00020221
length 801
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00020221
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13400114 ~ 13403240 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTACGGATCTGGAGCGCATGTCTCTGAACTCATCCTCTGCCAACTCGGTGGGCTCTGGCGGCCGCTCGCTGTCGGCCAACGTGCGCAAGCTGCACAACGCGCTCAACCTGCTGCTCAGCGAGTTCGAGCGGGAGCAGTTCATCCACTGCCTCAACGTGTACCACTCCAAGCGCAACGTCTTCGACCTGGTGCAGACGCTCAAAGTCATCCTGAACGCGCCGAGCAAGCGCCAGCTGCTGCCCATGCTGAGGCTGGTGATCCCTAGGTCGGACCAGCTCCTCTTCGACCAGTACACCTCGGAGGGGCTGTACCTGAAATCCGAGCTTCTGACGAGCAACGGCAACCTCAGCCCCGACGGCCCGGTGGAGGCGACCAACGCGAACCTAGCACACAACGCCACCCCGTCTCACGGCGCAGCCCAGCCCACGCCGGGGCTCCTCCGAGCATCGCCGGATAGTTTCAGCACCAGCAGCGAGGGGACAGCTCCCTCGCTGGCGCCGCTGCTGGGCCGCCCGTTCCTGCAGGAGATGCTGCCCGGCGAGATCCGACAGGTGTGTCTGAAGCGTCACAAGAGCAACGAGGGTCTGGGTTTCAGTATCCGGGGCGGCTCGGAGCACGGCGTGGGGATATACGTGTCCCTGGTGGAGCCCGGGTCCCTGGCCGAGAAGGAGGGGCTGAGGGTCGGCGACCAGATACTGCGGGTGAACGACAAGGTCTTCGAAAGAGTCACCCATGCCGAAGCCGTGAAGCCTTTGCAGCCATATGTTTTGGCTCTTTCGGAGTGCTCCAAGGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77227 lncRNA downstream 62013 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 392448 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 594681 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 656677 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 816366 12578671 ~ 12583748 (-) True G61488
TU77271 lncRNA upstream 43762 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 175169 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 347844 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 386151 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 408731 13811971 ~ 13813003 (-) False AMCG00020256
AMCG00020216 mRNA downstream 12117 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020215 mRNA downstream 48445 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020214 mRNA downstream 56509 13338553 ~ 13343605 (-) True AMCG00020214
AMCG00020207 mRNA downstream 126718 13255533 ~ 13273396 (-) True AMCG00020207
AMCG00020211 mRNA downstream 152486 13237915 ~ 13247628 (-) True AMCG00020211
AMCG00020219 mRNA upstream 5465 13408705 ~ 13427411 (-) True AMCG00020219
AMCG00020220 mRNA upstream 66570 13469810 ~ 13470856 (-) True AMCG00020220
AMCG00020224 mRNA upstream 183140 13586380 ~ 13588928 (-) True AMCG00020224
AMCG00020230 mRNA upstream 192460 13595700 ~ 13596107 (-) False AMCG00020230
AMCG00020231 mRNA upstream 247349 13650589 ~ 13663220 (-) True AMCG00020231
TU77151 other downstream 175604 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 401891 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 890177 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 903374 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 907549 12490698 ~ 12492565 (-) False AMCG00020180
TU77373 other upstream 192278 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 260847 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 401780 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 401780 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 726438 14129678 ~ 14131569 (-) True G62011

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038347 True 3469 mRNA 0.54 11 NC_007132.7 13983265 ~ 14174786 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_11178091_11284993.mRNA True 5595 mRNA 0.50 25 CI01000006 11177136 ~ 11285031 (+)