RNA id: AMCG00020224


Basic Information

Item Value
RNA id AMCG00020224
length 1013
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00020224
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13586380 ~ 13588928 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTACGTAGAGGCTGCGCTGGACTCTTGCATCTGTTATtatccttttatttatattgttattactgCAAATGGACAGTGGTAAGGGTGCAGCTCAATGTAAGCCTCTCTACTGCACGATCGTAAATAAAAGCGACAGCTCCAGATACCTGTGCTACAGTACTACCCAGGACGGTGTGTTCAATATCGGccTGACGAATGTAACAGATGTGTGGAGCACAACGTTCACCTTGGACTCACTGACGCAGCACAGGCAGAGCTGTGCTGTGAACTCCACTGAGGAGTACGTCAACAGGATAAGgtCAGCCTGTGAGTGTGGCTCAGTGTTGGTGTCAGTTCAGGATGGCGGGGTCACCCTGGAGCTTGACTCCCCGGAGCCTGGGGTTATGACTTTTGTCCTATCCAGGCTGTCTGACCATGAAGCTCAAGAGGAGCTCAGAGTAGTGCTGTTAGGGATggcagagagactgagggacctagAGAGCACAGCAGGGGGTGCCACCTCCTTCAGTCCAGCCAAGAACCAACAGAGACGCACAGactttGAGCCTAGGAGGCAGCAGAATGGAGGGAGTGGGTCTTTAAAAGCTGCAAAGAAGCGTCTCCCCGGAGAATCACTCATCAACCCGGGAACTAGAAGGAAGAAGGAGGCCAGGGGTGTGGCTTTCGAGGACGAGGAGAGCTGACCAGCACAGAGAAGCTGCtaacacacactcgcacacaaacacacaggagtgtttaatgctgttttacatgtttgtatTGATGTGAAATTCTGCTGGAGCTCAGGCCTCCCCAAGCAAACTAACTTCTTCACGGACTGAGAATGTCATGTAAGACCTGAGGAACAGTGAGCGCCCTCTTATTACTAATGTCATTACTGTTGTAATTTTAATCTATACAGAACTGACCCATATGAACTTTTAGGTAAGGGAGAGAGGAAACCAGGGAGATTTTGAAAACTCCTATCTTAAAACTTTCTTCTCCTTgtcttctctttcctttctctttctt

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03030 DNA replication
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77271 lncRNA downstream 136318 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 248279 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 578714 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 780947 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 842943 12719367 ~ 12743437 (-) True G61550
TU77451 lncRNA upstream 162156 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 200463 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 223043 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 223043 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 232820 13821748 ~ 13823540 (-) True G61927
AMCG00020220 mRNA downstream 115524 13469810 ~ 13470856 (-) True AMCG00020220
AMCG00020219 mRNA downstream 158969 13408705 ~ 13427411 (-) True AMCG00020219
AMCG00020221 mRNA downstream 183140 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020216 mRNA downstream 198383 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020215 mRNA downstream 234711 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020230 mRNA upstream 6772 13595700 ~ 13596107 (-) False AMCG00020230
AMCG00020231 mRNA upstream 61661 13650589 ~ 13663220 (-) True AMCG00020231
AMCG00020229 mRNA upstream 75148 13664076 ~ 13665592 (-) True AMCG00020229
AMCG00020237 mRNA upstream 83367 13672295 ~ 13684406 (-) True AMCG00020237
AMCG00020236 mRNA upstream 101999 13690927 ~ 13702190 (-) True AMCG00020236
TU77151 other downstream 361870 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 588157 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1076443 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 1089640 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 1093815 12490698 ~ 12492565 (-) False AMCG00020180
TU77373 other upstream 6590 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 75159 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 216092 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 216092 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 540750 14129678 ~ 14131569 (-) True G62011

Expression Profile