RNA id: AMCG00020229


Basic Information

Item Value
RNA id AMCG00020229
length 699
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00020229
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13664076 ~ 13665592 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAGTGAGTGCGGTGAGGGCAGACGCCGGTGCACACTGTCATGGCGAGCGCCCGGTTAGCTGCGATTGCCGAAGCGGACATCGACCCCAATGGGGTCTTCAAATACGTACTGATCCGGGTCCAAACTACGGCGATAGGTGACGAGACCCCTAGTAAAGATATCGTACGTGGGTACGCGTGGGCCGAGTACCATGAGGAGATCGAGCGCGGTGGCGGGCTGGACTGTGAGTGCCTTGGGGGGGGTAGGATCAGGCATGACAGCCAGGCCAAGAAGATACATGTCTATGGATACTCTATGGGTTTTGGTCGAGCCAACCATGCGGTTGCCACTGAGAAGTTGCAGGCCCGTTACCCTGACTATGAGGTCACATGGGCTAATGAGGGGTACTGACACACCAAGACCAGAGCAGACTGGACGGAACCAGATACGCAGGAAGGACAGACAGGGTGTGAGAACACAGTGTGGTGTACAAGATGTGTGTACAGCATCACAGAGACTCATCCCCACTGAGCACAGCCTGAGAGGCACAGTCTGACTCGCCCAGCAGGGGTCAGCGTTGCACTTGAATTAAaactttcttgttgttgttggtttaatttgattattttgtatatatcttTCATTCAAAGAGGCATTCTGTGGTATACaattctgtaataaaaaaataaaaatgtatatcttgCCGAGTCTGAAAA

Function

GO:

id name namespace
GO:0035971 peptidyl-histidine dephosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K01112 PHPT1; phosphohistidine phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77364 lncRNA downstream 10697 13578409 ~ 13653379 (-) True G61803
TU77271 lncRNA downstream 214014 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 325975 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 656410 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 858643 12804670 ~ 12805433 (-) True G61558
TU77451 lncRNA upstream 85492 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 123799 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 146379 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 146379 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 156156 13821748 ~ 13823540 (-) True G61927
AMCG00020231 mRNA downstream 856 13650589 ~ 13663220 (-) True AMCG00020231
AMCG00020230 mRNA downstream 67969 13595700 ~ 13596107 (-) False AMCG00020230
AMCG00020224 mRNA downstream 75148 13586380 ~ 13588928 (-) True AMCG00020224
AMCG00020220 mRNA downstream 193220 13469810 ~ 13470856 (-) True AMCG00020220
AMCG00020219 mRNA downstream 236665 13408705 ~ 13427411 (-) True AMCG00020219
AMCG00020237 mRNA upstream 6703 13672295 ~ 13684406 (-) True AMCG00020237
AMCG00020236 mRNA upstream 25335 13690927 ~ 13702190 (-) True AMCG00020236
AMCG00020235 mRNA upstream 43224 13708816 ~ 13710669 (-) True AMCG00020235
AMCG00020240 mRNA upstream 46190 13711782 ~ 13715191 (-) True AMCG00020240
AMCG00020238 mRNA upstream 53838 13719430 ~ 13722948 (-) True AMCG00020238
TU77373 other downstream 67159 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 439566 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 665853 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1154139 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 1167336 12490698 ~ 12496740 (-) False AMCG00020180
TU77536 other upstream 139428 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 139428 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 464086 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 664930 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2433308 16098900 ~ 16102739 (-) False AMCG00020316

Expression Profile